########################################
# Program: needle
# Rundate: Wed 30 May 2018 11:21:07
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/sp_Q97SV4_RL4_STRPN_3j9w_BF/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_Q97SV4_RL4_STRPN_3j9w_BF/sp_Q97SV4_RL4_STRPN_50S_ribosomal_protein_L4_OS_Streptococcus_pneumoniae_serotype_4_strain_ATCC_BAA-334__TIGR4_OX_170187_GN_rplD_PE_3_SV_1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_Q97SV4_RL4_STRPN_3j9w_BF/3j9w_E.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/sp_Q97SV4_RL4_STRPN_3j9w_BF/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: sp_Q97SV4_RL4_STRPN_50S_ribosomal_protein_L4_OS_Streptococcus_pneumoniae_serotype_4_strain_ATCC_BAA-334__TIGR4_OX_170187_GN_rplD_PE_3_SV_1
# 2: 3j9w_E_mol_protein_length_207__50S_ribosomal_protein_uL4
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 207
# Identity:     130/207 (62.8%)
# Similarity:   157/207 (75.8%)
# Gaps:           2/207 ( 1.0%)
# Score: 684.0
# 
#
#=======================================

sp_Q97SV4_RL4      1 MANVTLFDQTGKEAGQVVLSDAVFGIEPNESVVFDVIISQRASLRQGTHA     50
                      ..|.|::|.|..||.:.|:.:|||||||||||||.|:.||||||||||.
3j9w_E_mol_pr      1 -PKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHK     49

sp_Q97SV4_RL4     51 VKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYK    100
                     |||||.|.|||||||||||||||||||||||||||||||||||||||.||
3j9w_E_mol_pr     50 VKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYK     99

sp_Q97SV4_RL4    101 LPQKVRRLALKSVYSEKVAENKFVAVDALSFTAPKTAEFAKVLAALSIDS    150
                     ||:||||||:|||.|.||.:|..:.::.|:....||.|.|.:|..||::.
3j9w_E_mol_pr    100 LPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEK    149

sp_Q97SV4_RL4    151 KVLVILEEGNEFAALSARNLPNVKVATATTASVLDIANSDKLLVTQAAIS    200
                     |.|::..:.||..||||||:|.|.|..|...:|||:.|.:|||:|:||:.
3j9w_E_mol_pr    150 KALIVTADANEAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVE    199

sp_Q97SV4_RL4    201 KIEEVLA    207
                     |:|||| 
3j9w_E_mol_pr    200 KVEEVL-    205


#---------------------------------------
#---------------------------------------