########################################
# Program: needle
# Rundate: Wed 30 May 2018 16:54:39
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/sp_Q50395_EMBB_MYCSM_3pty_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/sp_Q50395_EMBB_MYCSM_3pty_A/sp_Q50395_EMBB_MYCSM_Probable_arabinosyltransferase_B_OS_Mycobacterium_smegmatis_OX_1772_GN_embB_PE_3_SV_3.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/sp_Q50395_EMBB_MYCSM_3pty_A/3pty_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/sp_Q50395_EMBB_MYCSM_3pty_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: sp_Q50395_EMBB_MYCSM_Probable_arabinosyltransferase_B_OS_Mycobacterium_smegmatis_OX_1772_GN_embB_PE_3_SV_3
# 2: 3pty_A_mol_protein_length_406__Arabinosyltransferase_C
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1084
# Identity:     137/1084 (12.6%)
# Similarity:   180/1084 (16.6%)
# Gaps:         802/1084 (74.0%)
# Score: 613.0
# 
#
#=======================================

sp_Q50395_EMB      1 MSGNMDEAVSGNMDEAVSAGKDVRIARWVATIAGLLGFVLSVSIPLLPVT     50
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB     51 QTTATLNWPQQGRLDNVTAPLISQAPLELTATVPCSVVRDLPPEGGLVFG    100
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    101 TAPAEGRDAALNAMLVNVTETRVDVIVRNVVVASVNRDRVAGPDCQRIEI    150
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    151 TSNLDGTYADFVGLTQISGEDAGKLQRTGYPDPNLRPAIVGVFTDLTGPA    200
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    201 PQGLSVSAEIDTRFTTHPTALKLAAMLLAIVSTVIALLALWRLDRLDGRR    250
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    251 MHRLIPTRWRTVTAVDGVVVGGMAIWYVIGANSSDDGYILQMARTAEHAG    300
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    301 YMANYFRWFGSPEDPFGWYYNVLALMTKVSDASIWIRLPDLICALICWLL    350
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    351 LSREVLPRLGPAVAGSRAAMWAAGLVLLGAWMPFNNGLRPEGQIATGALI    400
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    401 TYVLIERAVTSGRLTPAALAITTAAFTLGIQPTGLIAVAALLAGGRPILR    450
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    451 IVIRRRRLDGTWPLIAPLLAAGTVILAVVFADQTIATVLEATRIRTAIGP    500
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    501 SQEWWTEKLRYYYLILPTTDGAISRRVAFVFTAMCLFPSLFMMLRRKHIA    550
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    551 GVARGPAWRLMGIIFATMFFLMFTPTKWTHHFGLFAAVGGAMAALATVLV    600
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    601 SPTVLRSARNRMAFLSLVLFVLAFCFASTNGWWYVSNFGAPFNNSVPKVG    650
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    651 GVQISAIFFALSAIAALWAFWLHLTRRTESRVVDRLTAAPIPVAAGFMVV    700
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

sp_Q50395_EMB    701 VMMASMAIGVVRQYPTYSNGWANIRAFAG-GCGLADDVLVEPDSNAGFLT    749
                                      |.|.:|::|.|| .||||:|||||.|.|||.|.
3pty_A_mol_pr      1 -----------------SVGRSNLQALAGKTCGLAEDVLVELDPNAGMLA     33

sp_Q50395_EMB    750 PLPGAYGPLG-PLGGEDPQGFSPDGVPDRIIAEAIRLNNPQPGTDYDWNR    798
                     |:.   .||. .||....:.|:|:|:|..:...|                
3pty_A_mol_pr     34 PVT---APLADALGAGLSEAFTPNGIPADVGTTA----------------     64

sp_Q50395_EMB    799 PIKLDEPGINGSTVPLPYGLDPKRVPVAGTYSTEAQQESRLSSAWYELPA    848
                          .||||||...|||.|||.|.||.|::....|..:.|.|.||.||.
3pty_A_mol_pr     65 -----APGINGSRARLPYNLDPARTPVLGSWRAGVQVPAMLRSGWYRLPT    109

sp_Q50395_EMB    849 RDETERAAHPLVVITAAGTITGESVANGLTTGQTVDLEYATRGPDGTLVP    898
                     .::.:||  ||:|:||||......|.....|.     |.|..|..|    
3pty_A_mol_pr    110 NEQRDRA--PLLVVTAAGRFDSREVRLQWATD-----EQAAAGHHG----    148

sp_Q50395_EMB    899 AGRVTPYDVGPTPSWRNLRYPRSEIPDDAVAVRVVAEDLSLSQGDWIAVT    948
                      |.:...|||..|:|||||.|.|.||..|..||:||:|..|:...|||:|
3pty_A_mol_pr    149 -GSMEFADVGAAPAWRNLRAPLSAIPSTATQVRLVADDQDLAPQHWIALT    197

sp_Q50395_EMB    949 PPRVPELQSVQEYVGSDQPVLMDWAVGLAFPCQQPMLHANGVTEVPKFRI    998
                     |||:|.::::|..||:..||.:||.||||||||:|..|..||.|.||:||
3pty_A_mol_pr    198 PPRIPRVRTLQNVVGAADPVFLDWLVGLAFPCQRPFGHQYGVDETPKWRI    247

sp_Q50395_EMB    999 SPDYYAKLQSTDTWQDGINGGLLGITDLLLRASVMSTYLSQDWGQDWGSL   1048
                     .||                    .||:||:||:.:::||..||.:|||:|
3pty_A_mol_pr    248 LPD--------------------RITELLMRATTVASYLKDDWFRDWGAL    277

sp_Q50395_EMB   1049 RKFDTVVEATPAELDFGSQTHSGLYSPGPLRIRP   1082
                     ::.....                           
3pty_A_mol_pr    278 QRLTPYY---------------------------    284


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