######################################## # Program: needle # Rundate: Wed 30 May 2018 13:05:36 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/sp_Q2G2Q0_GYRA_STAA8_6fqv_A/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/sp_Q2G2Q0_GYRA_STAA8_6fqv_A/sp_Q2G2Q0_GYRA_STAA8_DNA_gyrase_subunit_A_OS_Staphylococcus_aureus_strain_NCTC_8325_OX_93061_GN_gyrA_PE_1_SV_1.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/sp_Q2G2Q0_GYRA_STAA8_6fqv_A/6fqv_A.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/sp_Q2G2Q0_GYRA_STAA8_6fqv_A/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: sp_Q2G2Q0_GYRA_STAA8_DNA_gyrase_subunit_A_OS_Staphylococcus_aureus_strain_NCTC_8325_OX_93061_GN_gyrA_PE_1_SV_1 # 2: 6fqv_A_mol_protein_length_490__DNA_gyrase_subunit_A # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 887 # Identity: 481/887 (54.2%) # Similarity: 481/887 (54.2%) # Gaps: 405/887 (45.7%) # Score: 2416.0 # # #======================================= sp_Q2G2Q0_GYR 1 MAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRIL 50 ||||||||||||||||||||||||||||||||||||||||| 6fqv_A_mol_pr 1 ---------NERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRIL 41 sp_Q2G2Q0_GYR 51 YGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYR 100 |||||||||||||||||||||||||||||||||||||||||||||||||| 6fqv_A_mol_pr 42 YGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYR 91 sp_Q2G2Q0_GYR 101 YPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNY 150 |||||||||||||||||||||||||||||||||||||||||||||||||| 6fqv_A_mol_pr 92 YPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNY 141 sp_Q2G2Q0_GYR 151 DGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSK 200 |||||||||||||||||||||||||||||||||||||||||||||||||| 6fqv_A_mol_pr 142 DGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSK 191 sp_Q2G2Q0_GYR 201 NPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIE 250 |||||||||||||||||||||||||||||||||||||||||||||||||| 6fqv_A_mol_pr 192 NPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIE 241 sp_Q2G2Q0_GYR 251 ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRT 300 |||||||||||||||||||||||||||||||||||||||||||||||||| 6fqv_A_mol_pr 242 ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRT 291 sp_Q2G2Q0_GYR 301 GVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKE 350 |||||||||||||||||||||||||||||||||||||||||||||||||| 6fqv_A_mol_pr 292 GVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKE 341 sp_Q2G2Q0_GYR 351 ALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRE 400 |||||||||||||||||||||||||||||||||||||||||||||||||| 6fqv_A_mol_pr 342 ALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRE 391 sp_Q2G2Q0_GYR 401 SDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLN 450 |||||||||||||||||||||||||||||||||||||||||||||||||| 6fqv_A_mol_pr 392 SDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLN 441 sp_Q2G2Q0_GYR 451 YISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDED 500 ||||||.|||||||||||||||||||||||||||||||||| 6fqv_A_mol_pr 442 YISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLG--------- 482 sp_Q2G2Q0_GYR 501 LIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLV 550 6fqv_A_mol_pr 482 -------------------------------------------------- 482 sp_Q2G2Q0_GYR 551 TLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVIS 600 6fqv_A_mol_pr 482 -------------------------------------------------- 482 sp_Q2G2Q0_GYR 601 TMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDE 650 6fqv_A_mol_pr 482 -------------------------------------------------- 482 sp_Q2G2Q0_GYR 651 LIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDE 700 6fqv_A_mol_pr 482 -------------------------------------------------- 482 sp_Q2G2Q0_GYR 701 VVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITER 750 6fqv_A_mol_pr 482 -------------------------------------------------- 482 sp_Q2G2Q0_GYR 751 NGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGD 800 6fqv_A_mol_pr 482 -------------------------------------------------- 482 sp_Q2G2Q0_GYR 801 DQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGTEQQREAVVNDETPGNAI 850 6fqv_A_mol_pr 482 -------------------------------------------------- 482 sp_Q2G2Q0_GYR 851 HTEVIDSEENDEDGRIEVRQDFMDRVEEDIQQSSDEE 887 6fqv_A_mol_pr 482 ------------------------------------- 482 #--------------------------------------- #---------------------------------------