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# Program: needle
# Rundate: Tue 12 Jun 2018 18:39:16
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/negativedb/seqid60_90/sp_Q06893_VANB_ENTFA_1e4e_A/needle.txt
#    -asequence /Users/teresatavella/Documents/negativedb/seqid60_90/sp_Q06893_VANB_ENTFA_1e4e_A/sp_Q06893_VANB_ENTFA_Vancomycin_B-type_resistance_protein_VanB_OS_Enterococcus_faecalis_strain_ATCC_700802__V583_OX_226185_GN_vanB_PE_1_SV_2.fa
#    -bsequence /Users/teresatavella/Documents/negativedb/seqid60_90/sp_Q06893_VANB_ENTFA_1e4e_A/1e4e_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/negativedb/seqid60_90/sp_Q06893_VANB_ENTFA_1e4e_A/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: sp_Q06893_VANB_ENTFA_Vancomycin_B-type_resistance_protein_VanB_OS_Enterococcus_faecalis_strain_ATCC_700802__V583_OX_226185_GN_vanB_PE_1_SV_2
# 2: 1e4e_A_mol_protein_length_343__VANCOMYCIN/TEICOPLANIN_A-TYPE_RESISTANCE_PROTEIN_VANA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 343
# Identity:     256/343 (74.6%)
# Similarity:   291/343 (84.8%)
# Gaps:           3/343 ( 0.9%)
# Score: 1349.0
# 
#
#=======================================

sp_Q06893_VAN      1 MNKIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWK     50
                      |:|||||:|||||||||||||||||||||||.||::|.||||||:||||
1e4e_A_mol_pr      1 -NRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWK     49

sp_Q06893_VAN     51 LCKKPCTEWEADS-LPAIFSPDRKTHGLLVMKEREYETRRIDVAFPVLHG     99
                     :|:|||.|||.:: ..|:.|||:|.|||||.|..|||...:||||..|||
1e4e_A_mol_pr     50 MCEKPCAEWENENCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHG     99

sp_Q06893_VAN    100 KCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEF    149
                     |.||||:|||||||||||:|||||||||.||||||.||:.||||||.|.|
1e4e_A_mol_pr    100 KSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAF    149

sp_Q06893_VAN    150 QMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQY    199
                     .:|.|.|:|.|.|.|||||||||||||||||.||||.:||:.|||:|.||
1e4e_A_mol_pr    150 WVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQY    199

sp_Q06893_VAN    200 DGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPE    249
                     |.|||||||:|||||||||:||...|:|||||||||.:||||||||.|||
1e4e_A_mol_pr    200 DSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPE    249

sp_Q06893_VAN    250 KGSENAMIIVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQEDGG    299
                     ||||||:|.||||:..|||.|:|||.||:|:.||||||||||:|||::|.
1e4e_A_mol_pr    250 KGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGR    299

sp_Q06893_VAN    300 IVLNEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLAIER    342
                     |||||||||||||||||||||.|||||:||.|||.||.||:: 
1e4e_A_mol_pr    300 IVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK-    341


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