######################################## # Program: needle # Rundate: Wed 30 May 2018 17:05:14 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/sp_P9WNL9_EMBA_MYCTU_3byw_B/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/sp_P9WNL9_EMBA_MYCTU_3byw_B/sp_P9WNL9_EMBA_MYCTU_Probable_arabinosyltransferase_A_OS_Mycobacterium_tuberculosis_strain_ATCC_25618__H37Rv_OX_83332_GN_embA_PE_1_SV_1.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/sp_P9WNL9_EMBA_MYCTU_3byw_B/3byw_B.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/sp_P9WNL9_EMBA_MYCTU_3byw_B/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: sp_P9WNL9_EMBA_MYCTU_Probable_arabinosyltransferase_A_OS_Mycobacterium_tuberculosis_strain_ATCC_25618__H37Rv_OX_83332_GN_embA_PE_1_SV_1 # 2: 3byw_B_mol_protein_length_177__Putative_arabinofuranosyltransferase # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1102 # Identity: 50/1102 ( 4.5%) # Similarity: 84/1102 ( 7.6%) # Gaps: 951/1102 (86.3%) # Score: 195.0 # # #======================================= sp_P9WNL9_EMB 1 MPHDGNERSHRIARLAAVVSGIAGLLLCGIVPLLPVNQTTATIFWPQGST 50 .:::.||| 3byw_B_mol_pr 1 ---------------------------------------QSSVSWPQ--- 8 sp_P9WNL9_EMB 51 ADGNITQITAPLVSGAPRALDISIPCSAIATLPANGGLVLSTLPAGGVDT 100 :|::..::|||:|..|.:.|..||.:::..|..:..|:|.||||...|. 3byw_B_mol_pr 9 -NGSLNSVSAPLMSYTPISFDAKIPVASVDKLRKDQDLILGTLPANSEDA 57 sp_P9WNL9_EMB 101 GKAGLFVRANQDTVVVAFRDSVAAVAARSTIA---AGGCSALHIWADTGG 147 |..|||||||.|.:.:.....:....::..:| |....|:....|... 3byw_B_mol_pr 58 GARGLFVRANDDGLQITSHGELVLDLSKRELAQLPADATIAISATEDETT 107 sp_P9WNL9_EMB 148 AGADFMGIPGGAGTLPPEKKPQVGGIFTDLKVGA-----QPGLSARVDID 192 ||.: |......|:..:.:|.:.||:|:|:..| ..||:|.|:|: 3byw_B_mol_pr 108 AGIE--GDDSTTETVERDVRPIIMGIYTELESNAAADLLNAGLNAHVEIN 155 sp_P9WNL9_EMB 193 TRFITTPGALKKAVMLLGVLAVLVAMVGLAALDRLSRGRTLRDWLTRYRP 242 :||. 3byw_B_mol_pr 156 SRFT---------------------------------------------- 159 sp_P9WNL9_EMB 243 RVRVGFASRLADAAVIATLLLWHVIGATSSDDGYLLTVARVAPKAGYVAN 292 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 293 YYRYFGTTEAPFDWYTSVLAQLAAVSTAGVWMRLPATLAGIACWLIVSRF 342 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 343 VLRRLGPGPGGLASNRVAVFTAGAVFLSAWLPFNNGLRPEPLIALGVLVT 392 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 393 WVLVERSIALGRLAPAAVAIIVATLTATLAPQGLIALAPLLTGARAIAQR 442 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 443 IRRRRATDGLLAPLAVLAAALSLITVVVFRDQTLATVAESARIKYKVGPT 492 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 493 IAWYQDFLRYYFLTVESNVEGSMSRRFAVLVLLFCLFGVLFVLLRRGRVA 542 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 543 GLASGPAWRLIGTTAVGLLLLTFTPTKWAVQFGAFAGLAGVLGAVTAFTF 592 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 593 ARIGLHSRRNLTLYVTALLFVLAWATSGINGWFYVGNYGVPWYDIQPVIA 642 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 643 SHPVTSMFLTLSILTGLLAAWYHFRMDYAGHTEVKDNRRNRILASTPLLV 692 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 693 VAVIMVAGEVGSMAKAAVFRYPLYTTAKANLTALSTGLSSCAMADDVLAE 742 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 743 PDPNAGMLQPVPGQAFGPDGPLGGISPVGFKPEGVGEDLKSDPVVSKPGL 792 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 793 VNSDASPNKPNAAITDSAGTAGGKGPVGINGSHAALPFGLDPARTPVMGS 842 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 843 YGENNLAATATSAWYQLPPRSPDRPLVVVSAAGAIWSYKEDGDFIYGQSL 892 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 893 KLQWGVTGPDGRIQPLGQVFPIDIGPQPAWRNLRFPLAWAPPEADVARIV 942 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 943 AYDPNLSPEQWFAFTPPRVPVLESLQRLIGSATPVLMDIATAANFPCQRP 992 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 993 FSEHLGIAELPQYRILPDHKQTAASSNLWQSSSTGGPFLFTQALLRTSTI 1042 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 1043 ATYLRGDWYRDWGSVEQYHRLVPADQAPDAVVEEGVITVPGWGRPGPIRA 1092 3byw_B_mol_pr 159 -------------------------------------------------- 159 sp_P9WNL9_EMB 1093 LP 1094 3byw_B_mol_pr 159 -- 159 #--------------------------------------- #---------------------------------------