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# Program: needle
# Rundate: Wed 30 May 2018 12:31:21
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/sp_P63200_RS12_SYNE7_5mmm_l/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_P63200_RS12_SYNE7_5mmm_l/sp_P63200_RS12_SYNE7_30S_ribosomal_protein_S12_OS_Synechococcus_elongatus_strain_PCC_7942_OX_1140_GN_rpsL_PE_3_SV_1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_P63200_RS12_SYNE7_5mmm_l/5mmm_l.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/sp_P63200_RS12_SYNE7_5mmm_l/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: sp_P63200_RS12_SYNE7_30S_ribosomal_protein_S12_OS_Synechococcus_elongatus_strain_PCC_7942_OX_1140_GN_rpsL_PE_3_SV_1
# 2: 5mmm_l_mol_protein_length_123__30S_ribosomal_protein_S12,_chloroplastic
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 124
# Identity:     100/124 (80.6%)
# Similarity:   110/124 (88.7%)
# Gaps:           2/124 ( 1.6%)
# Score: 541.0
# 
#
#=======================================

sp_P63200_RS1      1 MPTIQQLIRDEREKITKKTKSPALKNCPQRRGVCTRVYTTTPKKPNSALR     50
                      |||:||||:.|:.|...||||||:.||||||.||||||.||||||||||
5mmm_l_mol_pr      1 -PTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALR     49

sp_P63200_RS1     51 KVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG    100
                     ||||||||||||:|||||||||||||||||::|||||||||||||||:||
5mmm_l_mol_pr     50 KVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRG     99

sp_P63200_RS1    101 TLDTAGVKDRRQSRSKYGAKRPKA    124
                     |||..|||||:|.|||||.|:|| 
5mmm_l_mol_pr    100 TLDAVGVKDRQQGRSKYGVKKPK-    122


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