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# Program: needle
# Rundate: Thu 31 May 2018 10:32:34
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90_done/sp_P63196_RS12_HAEIN_4v6c_AL/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90_done/sp_P63196_RS12_HAEIN_4v6c_AL/sp_P63196_RS12_HAEIN_30S_ribosomal_protein_S12_OS_Haemophilus_influenzae_strain_ATCC_51907__DSM_11121__KW20__Rd_OX_71421_GN_rpsL_PE_3_SV_2.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90_done/sp_P63196_RS12_HAEIN_4v6c_AL/4v6c_K.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90_done/sp_P63196_RS12_HAEIN_4v6c_AL/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: sp_P63196_RS12_HAEIN_30S_ribosomal_protein_S12_OS_Haemophilus_influenzae_strain_ATCC_51907__DSM_11121__KW20__Rd_OX_71421_GN_rpsL_PE_3_SV_2
# 2: 4v6c_K_mol_protein_length_124__30S_ribosomal_protein_S12
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 124
# Identity:     115/124 (92.7%)
# Similarity:   120/124 (96.8%)
# Gaps:           1/124 ( 0.8%)
# Score: 620.0
# 
#
#=======================================

sp_P63196_RS1      1 MATINQLVRKPRVKKVVKSNVPALEACPQKRGVCTRVYTTTPKKPNSALR     50
                      ||:||||||||.:||.|||||||||||||||||||||||||||||||||
4v6c_K_mol_pr      1 -ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALR     49

sp_P63196_RS1     51 KVCRIRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRG    100
                     ||||:||||||||||||||||||||||||:||||||||||||||||||||
4v6c_K_mol_pr     50 KVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRG     99

sp_P63196_RS1    101 ALDCAGVKDRKQGRSKYGVKRPKA    124
                     ||||:|||||||.|||||||||||
4v6c_K_mol_pr    100 ALDCSGVKDRKQARSKYGVKRPKA    123


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