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# Program: needle
# Rundate: Wed 30 May 2018 12:10:29
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/sp_P61182_RL22_STRPN_5njt_l/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_P61182_RL22_STRPN_5njt_l/sp_P61182_RL22_STRPN_50S_ribosomal_protein_L22_OS_Streptococcus_pneumoniae_serotype_4_strain_ATCC_BAA-334__TIGR4_OX_170187_GN_rplV_PE_1_SV_1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_P61182_RL22_STRPN_5njt_l/5njt_l.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/sp_P61182_RL22_STRPN_5njt_l/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: sp_P61182_RL22_STRPN_50S_ribosomal_protein_L22_OS_Streptococcus_pneumoniae_serotype_4_strain_ATCC_BAA-334__TIGR4_OX_170187_GN_rplV_PE_1_SV_1
# 2: 5njt_l_mol_protein_length_109__50S_ribosomal_protein_L22
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 114
# Identity:      70/114 (61.4%)
# Similarity:    90/114 (78.9%)
# Gaps:           5/114 ( 4.4%)
# Score: 363.0
# 
#
#=======================================

sp_P61182_RL2      1 MAEITSAKAMARTVRVSPRKSRLVLDNIRGKSVADAIAILTFTPNKAAEI     50
                          .|||:|||||::|||:|||:|.||||.|.:|::||..||..|:.|
5njt_l_mol_pr      1 -----QAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTPRAASPI     45

sp_P61182_RL2     51 ILKVLNSAVANAENNFGLDKANLVVSEAFANEGPTMKRFRPRAKGSASPI    100
                     |.|||.||:||||:|:.:|..|||:|:||.:||||:|||||||.|.||.|
5njt_l_mol_pr     46 IEKVLKSAIANAEHNYEMDANNLVISQAFVDEGPTLKRFRPRAMGRASQI     95

sp_P61182_RL2    101 NKRTAHITVAVAEK    114
                     ||||:|||:.|:||
5njt_l_mol_pr     96 NKRTSHITIVVSEK    109


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