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# Program: needle
# Rundate: Wed 30 May 2018 11:33:02
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/sp_P36556_BASR_SALTY_4s04_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_P36556_BASR_SALTY_4s04_A/sp_P36556_BASR_SALTY_Transcriptional_regulatory_protein_BasR_OS_Salmonella_typhimurium_strain_LT2__SGSC1412__ATCC_700720_OX_99287_GN_basR_PE_1_SV_1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_P36556_BASR_SALTY_4s04_A/4s04_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/sp_P36556_BASR_SALTY_4s04_A/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: sp_P36556_BASR_SALTY_Transcriptional_regulatory_protein_BasR_OS_Salmonella_typhimurium_strain_LT2__SGSC1412__ATCC_700720_OX_99287_GN_basR_PE_1_SV_1
# 2: 4s04_A_mol_protein_length_232__DNA-binding_transcriptional_regulator_BasR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 222
# Identity:     170/222 (76.6%)
# Similarity:   190/222 (85.6%)
# Gaps:           3/222 ( 1.4%)
# Score: 879.0
# 
#
#=======================================

sp_P36556_BAS      1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVL     50
                     ||||::|||.|||||||||.|:|||.|||||||..|..||.|.||||:||
4s04_A_mol_pr      1 MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVL     50

sp_P36556_BAS     51 DLGLPDEDGLHFLTRIRQKKYTLPVLILTAHDTLNDRITGLDVGADDYLV    100
                     |||||||||||||:|:|::|.|.|||||||.|||.|||:|||.|||||||
4s04_A_mol_pr     51 DLGLPDEDGLHFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLV    100

sp_P36556_BAS    101 KPFALEELHARIRALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTL    150
                     ||||||||:||||||||||||||::|::||||.||:.|...|.....|.|
4s04_A_mol_pr    101 KPFALEELNARIRALLRRHNNQGDNEISVGNLRLNVTRRLVWLGETALDL    150

sp_P36556_BAS    151 TPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDK    200
                     ||||||||||||:||||||||||||||||:.||||:||||||||||||:|
4s04_A_mol_pr    151 TPKEYALLSRLMMKAGSPVHREILYNDIYSGDNEPATNTLEVHIHNLREK    200

sp_P36556_BAS    201 VGKSRIRTVRGFGYMLVATEES    222
                     :|||||||||||||||...   
4s04_A_mol_pr    201 IGKSRIRTVRGFGYMLANN---    219


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