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# Program: needle
# Rundate: Tue 12 Jun 2018 18:44:29
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/negativedb/seqid60_90/sp_P30843_BASR_ECOLI_4s04_E/needle.txt
#    -asequence /Users/teresatavella/Documents/negativedb/seqid60_90/sp_P30843_BASR_ECOLI_4s04_E/sp_P30843_BASR_ECOLI_Transcriptional_regulatory_protein_BasR_OS_Escherichia_coli_strain_K12_OX_83333_GN_basR_PE_1_SV_3.fa
#    -bsequence /Users/teresatavella/Documents/negativedb/seqid60_90/sp_P30843_BASR_ECOLI_4s04_E/4s04_E.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/negativedb/seqid60_90/sp_P30843_BASR_ECOLI_4s04_E/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: sp_P30843_BASR_ECOLI_Transcriptional_regulatory_protein_BasR_OS_Escherichia_coli_strain_K12_OX_83333_GN_basR_PE_1_SV_3
# 2: 4s04_E_mol_protein_length_232__DNA-binding_transcriptional_regulator_BasR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 222
# Identity:     170/222 (76.6%)
# Similarity:   194/222 (87.4%)
# Gaps:           3/222 ( 1.4%)
# Score: 886.0
# 
#
#=======================================

sp_P30843_BAS      1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVL     50
                     ||||::|||.|||||||||.|:|||.||.|:||..|..||.:.||||:||
4s04_E_mol_pr      1 MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVL     50

sp_P30843_BAS     51 DLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLV    100
                     |||||||||||||:|:|::|.|.|||||||||||.|:|:|||.|||||||
4s04_E_mol_pr     51 DLGLPDEDGLHFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLV    100

sp_P30843_BAS    101 KPFALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELIL    150
                     ||||||||:||||||||||||||::|:.||||.||:.||.||:|...|.|
4s04_E_mol_pr    101 KPFALEELNARIRALLRRHNNQGDNEISVGNLRLNVTRRLVWLGETALDL    150

sp_P30843_BAS    151 TPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDK    200
                     ||||||||||||:||||||||||||||||:.||||:||||||||||||:|
4s04_E_mol_pr    151 TPKEYALLSRLMMKAGSPVHREILYNDIYSGDNEPATNTLEVHIHNLREK    200

sp_P30843_BAS    201 VGKARIRTVRGFGYMLVANEEN    222
                     :||:||||||||||||..|   
4s04_E_mol_pr    201 IGKSRIRTVRGFGYMLANN---    219


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