########################################
# Program: needle
# Rundate: Tue 12 Jun 2018 19:12:22
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/negativedb/seqid30_85/sp_P13364_GYRB_PSEPU_4juo_C/needle.txt
#    -asequence /Users/teresatavella/Documents/negativedb/seqid30_85/sp_P13364_GYRB_PSEPU_4juo_C/sp_P13364_GYRB_PSEPU_DNA_gyrase_subunit_B_OS_Pseudomonas_putida_OX_303_GN_gyrB_PE_3_SV_2.fa
#    -bsequence /Users/teresatavella/Documents/negativedb/seqid30_85/sp_P13364_GYRB_PSEPU_4juo_C/4juo_C.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/negativedb/seqid30_85/sp_P13364_GYRB_PSEPU_4juo_C/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: sp_P13364_GYRB_PSEPU_DNA_gyrase_subunit_B_OS_Pseudomonas_putida_OX_303_GN_gyrB_PE_3_SV_2
# 2: 4juo_C_mol_protein_length_670__DNA_topoisomerase_4_subunit_B
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity:     276/814 (33.9%)
# Similarity:   380/814 (46.7%)
# Gaps:         276/814 (33.9%)
# Score: 1166.5
# 
#
#=======================================

sp_P13364_GYR      1 MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSI     50
                                        |||||||||||.| ||:||||:|:|:|||::
4juo_C_mol_pr      1 -------------------AVRKRPGMYIGST-DGAGLHHLVWEIVDNAV     30

sp_P13364_GYR     51 DEALAGHCDDITVIIHTDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVL    100
                     ||||:   |.|.|.|:.|.|::|:|:               ..|||.|:|
4juo_C_mol_pr     31 DEALS---DRIDVTINKDGSLTVQDH---------------TVEVIFTIL     62

sp_P13364_GYR    101 HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVH-    149
                     ||||||          |||||.|||||||..|.:.:.|.|.:::|.:.: 
4juo_C_mol_pr     63 HAGGKF----------LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENG    102

sp_P13364_GYR    150 GVPQAPMAVVGES--ETTGTHIHFKPSAETFKNIHFSWDILAKRIRELSF    197
                     |.|...:..:|.:  ..|||.:.|.|.|..|....|.::.:::|:.|.:|
4juo_C_mol_pr    103 GKPVTTLKKIGTAPKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAF    152

sp_P13364_GYR    198 LNSGVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNK---TPVNSQVFHF    244
                     |...|.:.|.|:|:.:...|.||  ::.||.|||.:|   ||    |.:|
4juo_C_mol_pr    153 LLKNVTLSLTDKRTDEAIEFHYE--VQDFVSYLNEDKEILTP----VLYF    196

sp_P13364_GYR    245 SVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS    294
                     ..: ::|..||||||:||.|::|:|.|.||:..:|||||..|.:|::|:.
4juo_C_mol_pr    197 EGE-DNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKV    245

sp_P13364_GYR    295 LNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDP--KFSSQTKDKL    342
                     :|.|..:.||.|:.:    |.|.||||.|::|:.||:.  :|..||||||
4juo_C_mol_pr    246 MNDYARKTGLLKEKE----GSDYREGLAAVLSILVPEEHLQFEGQTKDKL    291

sp_P13364_GYR    343 VSSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKARE    392
                     .|...:..|:..:....:.||:||...|..::.|.|.|..||||||||| 
4juo_C_mol_pr    292 GSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKAR-    340

sp_P13364_GYR    393 MTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRT    442
                                     |...|.|:||.:||||||||||||||||||:|:.
4juo_C_mol_pr    341 ----------------LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKF    374

sp_P13364_GYR    443 QAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRY    492
                     ||||||:||::|..||:...::.::|:.|:|..:|.|:| .:::|:...|
4juo_C_mol_pr    375 QAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVG-ADFSIEDANY    423

sp_P13364_GYR    493 HNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKKG    542
                     ..||||||||.||:||:|||||||:|.:..|||.|::||| |||||    
4juo_C_mol_pr    424 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA-PPLYK----    468

sp_P13364_GYR    543 KQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLESLVNEFRSV    592
                                                                       
4juo_C_mol_pr    468 --------------------------------------------------    468

sp_P13364_GYR    593 MKTLKRLSRLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAKLQERLNSS    642
                                                                       
4juo_C_mol_pr    468 --------------------------------------------------    468

sp_P13364_GYR    643 QKSGLAYNASLREDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTV    692
                                                                       
4juo_C_mol_pr    468 --------------------------------------------------    468

sp_P13364_GYR    693 VNIGAKLSSLLGEGAYVQRGERRKAIVEFKEGLDWLMNETTKRHTIQRYK    742
                                   ||.                 |...|..:...:||||
4juo_C_mol_pr    469 --------------AYA-----------------WTDGELEELRKLQRYK    487

sp_P13364_GYR    743 GLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRE    792
                     ||||||.||||||||:|..|.:::|||||...|::..|.||||.|||||:
4juo_C_mol_pr    488 GLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRK    537

sp_P13364_GYR    793 FIESNALSVSNLDF    806
                     :||.|....     
4juo_C_mol_pr    538 WIEDNVKFT-----    546


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