######################################## # Program: needle # Rundate: Tue 12 Jun 2018 19:00:54 # Commandline: needle # -outfile /Users/teresatavella/Documents//negativedb/seqid60_low90/sp_P0C1U9_PARC_STAAU_2inr_A/needle.txt # -asequence /Users/teresatavella/Documents//negativedb/seqid60_low90/sp_P0C1U9_PARC_STAAU_2inr_A/sp_P0C1U9_PARC_STAAU_DNA_topoisomerase_4_subunit_A_OS_Staphylococcus_aureus_OX_1280_GN_parC_PE_3_SV_1.fa # -bsequence /Users/teresatavella/Documents//negativedb/seqid60_low90/sp_P0C1U9_PARC_STAAU_2inr_A/2inr_A.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/negativedb/seqid60_low90/sp_P0C1U9_PARC_STAAU_2inr_A/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: sp_P0C1U9_PARC_STAAU_DNA_topoisomerase_4_subunit_A_OS_Staphylococcus_aureus_OX_1280_GN_parC_PE_3_SV_1 # 2: 2inr_A_mol_protein_length_514__DNA_topoisomerase_4_subunit_A # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 800 # Identity: 439/800 (54.9%) # Similarity: 441/800 (55.1%) # Gaps: 358/800 (44.8%) # Score: 2158.5 # # #======================================= sp_P0C1U9_PAR 1 MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMY 50 ||||||||||||||||||||| 2inr_A_mol_pr 1 -----------------------------ALPDVRDGLKPVQRRILYAMY 21 sp_P0C1U9_PAR 51 SSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLI 100 ||||||||||||||||||||||||||. |||:|||||||||||||||| 2inr_A_mol_pr 22 SSGNTHDKNFRKSAKTVGDVIGQYHPS---SVYEAMVRLSQDWKLRHVLI 68 sp_P0C1U9_PAR 101 EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTT 150 |||||||||||||||||||||||||||||||||||||||||||||||||| 2inr_A_mol_pr 69 EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTT 118 sp_P0C1U9_PAR 151 LEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDI 200 ||||||||||||||||||||| ||||||||||||||||||||||||||| 2inr_A_mol_pr 119 LEPMVLPSRFPNLLVNGSTGI--GYATDIPPHNLAEVIQATLKYIDNPDI 166 sp_P0C1U9_PAR 201 TVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLRN 250 ||||||||||||||||||||||||||||||||||||||||||||||| 2inr_A_mol_pr 167 TVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEET--- 213 sp_P0C1U9_PAR 251 GRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIA 300 |||||||||||||||||||||||||||||||| |||||||||||||| 2inr_A_mol_pr 214 -RKQLIITEIPYEVNKSSLVKRIDELRADKKVD---EVRDETDRTGLRIA 259 sp_P0C1U9_PAR 301 IELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSY 350 ||| ||||||||||||||||||||||||||||||||||||||||| 2inr_A_mol_pr 260 IEL------ESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSY 303 sp_P0C1U9_PAR 351 LNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKR 400 |||||||||||||||||||||||||||||||||||||||||||||||||| 2inr_A_mol_pr 304 LNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKR 353 sp_P0C1U9_PAR 401 DAKENLIEVFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQL 450 |||||||||:|||||||||||||||||||||||||||||||||||||||| 2inr_A_mol_pr 354 DAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQL 403 sp_P0C1U9_PAR 451 RHILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPS 500 ||||||||||||||||||||||||||||||||||||||| 2inr_A_mol_pr 404 RHILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEE----------- 442 sp_P0C1U9_PAR 501 EEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDGDSLLKHQEVNTQDTVL 550 2inr_A_mol_pr 442 -------------------------------------------------- 442 sp_P0C1U9_PAR 551 VFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFN 600 2inr_A_mol_pr 442 -------------------------------------------------- 442 sp_P0C1U9_PAR 601 TDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEK 650 2inr_A_mol_pr 442 -------------------------------------------------- 442 sp_P0C1U9_PAR 651 DQLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSE 700 2inr_A_mol_pr 442 -------------------------------------------------- 442 sp_P0C1U9_PAR 701 NDTILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVV 750 2inr_A_mol_pr 442 -------------------------------------------------- 442 sp_P0C1U9_PAR 751 TGEHSQYTLYSKSNEEHGLINDIHKSEQYTNGSFIVDTDDFGEVIDMYIS 800 2inr_A_mol_pr 442 -------------------------------------------------- 442 #--------------------------------------- #---------------------------------------