########################################
# Program: needle
# Rundate: Tue 12 Jun 2018 18:45:26
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/negativedb/seqid60_90/sp_P0A6N3_EFTU_ECO57_4pc3_B/needle.txt
#    -asequence /Users/teresatavella/Documents/negativedb/seqid60_90/sp_P0A6N3_EFTU_ECO57_4pc3_B/sp_P0A6N3_EFTU_ECO57_Elongation_factor_Tu_OS_Escherichia_coli_O157_H7_OX_83334_GN_tufA_PE_3_SV_2.fa
#    -bsequence /Users/teresatavella/Documents/negativedb/seqid60_90/sp_P0A6N3_EFTU_ECO57_4pc3_B/4pc3_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/negativedb/seqid60_90/sp_P0A6N3_EFTU_ECO57_4pc3_B/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: sp_P0A6N3_EFTU_ECO57_Elongation_factor_Tu_OS_Escherichia_coli_O157_H7_OX_83334_GN_tufA_PE_3_SV_2
# 2: 4pc3_B_mol_protein_length_394__Elongation_factor_Tu_1
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 394
# Identity:     371/394 (94.2%)
# Similarity:   371/394 (94.2%)
# Gaps:          22/394 ( 5.6%)
# Score: 1902.5
# 
#
#=======================================

sp_P0A6N3_EFT      1 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI     50
                             ||||||||||||||||||||||||||||||||||        
4pc3_B_mol_pr      1 --------TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGG--------     34

sp_P0A6N3_EFT     51 DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMD    100
                           ||||||||||||||||||||||||||||||||||||||||||||
4pc3_B_mol_pr     35 ------KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMD     78

sp_P0A6N3_EFT    101 GAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELV    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
4pc3_B_mol_pr     79 GAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELV    128

sp_P0A6N3_EFT    151 EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
4pc3_B_mol_pr    129 EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI    178

sp_P0A6N3_EFT    201 PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKE    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
4pc3_B_mol_pr    179 PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKE    228

sp_P0A6N3_EFT    251 TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIK    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
4pc3_B_mol_pr    229 TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIK    278

sp_P0A6N3_EFT    301 PHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
4pc3_B_mol_pr    279 PHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM    328

sp_P0A6N3_EFT    351 VMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS    394
                     |||||||||||||||||||||||||||||||||||||||||||.
4pc3_B_mol_pr    329 VMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG    372


#---------------------------------------
#---------------------------------------