########################################
# Program: needle
# Rundate: Wed 30 May 2018 14:57:25
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/sp_P0A4L9_GYRB_STRPN_4i3h_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/sp_P0A4L9_GYRB_STRPN_4i3h_A/sp_P0A4L9_GYRB_STRPN_DNA_gyrase_subunit_B_OS_Streptococcus_pneumoniae_serotype_4_strain_ATCC_BAA-334__TIGR4_OX_170187_GN_gyrB_PE_3_SV_1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/sp_P0A4L9_GYRB_STRPN_4i3h_A/4i3h_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/sp_P0A4L9_GYRB_STRPN_4i3h_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: sp_P0A4L9_GYRB_STRPN_DNA_gyrase_subunit_B_OS_Streptococcus_pneumoniae_serotype_4_strain_ATCC_BAA-334__TIGR4_OX_170187_GN_gyrB_PE_3_SV_1
# 2: 4i3h_A_mol_protein_length_1144__Topoisomerase_IV_subunit_B,_DNA_topoisomerase_4_subunit_A_chimera
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1134
# Identity:     293/1134 (25.8%)
# Similarity:   406/1134 (35.8%)
# Gaps:         583/1134 (51.4%)
# Score: 1432.0
# 
#
#=======================================

sp_P0A4L9_GYR      1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEI     50
                                              |||.|||||||||...|||||||||
4i3h_A_mol_pr      1 -------------------------AVRKRPGMYIGSTDGAGLHHLVWEI     25

sp_P0A4L9_GYR     51 VDNSIDEALAGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVET    100
                     |||::||||   :..|.|.|..|.|:||.|.               .||.
4i3h_A_mol_pr     26 VDNAVDEAL---SDRIDVTINKDGSLTVQDH---------------TVEV     57

sp_P0A4L9_GYR    101 VFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQ    150
                     :||:|||||||          |||||||||||||:.|:|.:.::|.::.|
4i3h_A_mol_pr     58 IFTILHAGGKF----------LHGVGSSVVNALSSWLEVEITRDGAVYKQ     97

sp_P0A4L9_GYR    151 EYRR-GHVVADLEIVGDT--DKTGTTVHFTPDPKIFTETTIFDFDKLNKR    197
                     .:.. |..|..|:.:|..  .||||.|.|.||..||: ||.|.::.:::|
4i3h_A_mol_pr     98 RFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFS-TTDFKYNTISER    146

sp_P0A4L9_GYR    198 IQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYINENKDVIFD    247
                     :.|.|||.:.:.:|:||||  .::...:|||.|:..:|.|:||:|:::  
4i3h_A_mol_pr    147 LNESAFLLKNVTLSLTDKR--TDEAIEFHYENGVQDFVSYLNEDKEIL--    192

sp_P0A4L9_GYR    248 TPI-YTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRT    296
                     ||: |.:||.:...||||:||..|:.:|::||.||:.|.:|||||.|.::
4i3h_A_mol_pr    193 TPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKS    242

sp_P0A4L9_GYR    297 ALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNP--QFEGQ    344
                     |:|:|:||||||..|||:.|    |.|.||||.||:|:..|..  |||||
4i3h_A_mol_pr    243 AITKVMNDYARKTGLLKEKE----GSDYREGLAAVLSILVPEEHLQFEGQ    288

sp_P0A4L9_GYR    345 TKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAA    394
                     ||.|||:.....:.:.:.::..:.|||||.::|..::.|.|.|..||.||
4i3h_A_mol_pr    289 TKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAA    338

sp_P0A4L9_GYR    395 KRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKSG    444
                     ::||               |||....|.|||:.||::|||||||||||.|
4i3h_A_mol_pr    339 RKAR---------------GKLTPAQSKNPAKNELYLVEGDSAGGSAKQG    373

sp_P0A4L9_GYR    445 RNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAEFDVS    494
                     |:|:||||||:|||::|..||.|..||.||||.::...:|.|.||:|.:.
4i3h_A_mol_pr    374 RDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIE    423

sp_P0A4L9_GYR    495 KARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIYG    544
                     .|.|.|:::|||||.|||||:|||||..||||:|::|||:||||.||:|.
4i3h_A_mol_pr    424 DANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK    473

sp_P0A4L9_GYR    545 VKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQ    594
                     :..|:    |...|..:|::|                |||||||||:..|
4i3h_A_mol_pr    474 MSKGA----YAWDGELEELRL----------------QRYKGLGEMNADQ    503

sp_P0A4L9_GYR    595 LWETTMDPEHRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYS    644
                     ||||||:||.|.:.||:::|.|.|::..::||||:|||||::||:|..::
4i3h_A_mol_pr    504 LWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFT    553

sp_P0A4L9_GYR    645 TLDV----------------------------------------------    648
                     ..::                                              
4i3h_A_mol_pr    554 LENIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNK    603

sp_P0A4L9_GYR    648 --------------------------------------------------    648
                                                                       
4i3h_A_mol_pr    604 DSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVE    653

sp_P0A4L9_GYR    648 --------------------------------------------------    648
                                                                       
4i3h_A_mol_pr    654 MHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEK    703

sp_P0A4L9_GYR    648 --------------------------------------------------    648
                                                                       
4i3h_A_mol_pr    704 EPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAK    753

sp_P0A4L9_GYR    648 --------------------------------------------------    648
                                                                       
4i3h_A_mol_pr    754 IDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGG    803

sp_P0A4L9_GYR    648 --------------------------------------------------    648
                                                                       
4i3h_A_mol_pr    804 KEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI    853

sp_P0A4L9_GYR    648 --------------------------------------------------    648
                                                                       
4i3h_A_mol_pr    854 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYI    903

sp_P0A4L9_GYR    648 --------------------------------------------------    648
                                                                       
4i3h_A_mol_pr    904 AHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKAD    953

sp_P0A4L9_GYR    648 --------------------------------------------------    648
                                                                       
4i3h_A_mol_pr    954 AKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLA   1003

sp_P0A4L9_GYR    648 ----------------------------------    648
                                                       
4i3h_A_mol_pr   1004 AIIGDERTMYNLMKKELREVKKKFATPRLSSLED   1037


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