########################################
# Program: needle
# Rundate: Wed 30 May 2018 11:49:31
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/sp_O86094_RPOB_LEGPN_4ljz_I/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_O86094_RPOB_LEGPN_4ljz_I/sp_O86094_RPOB_LEGPN_DNA-directed_RNA_polymerase_subunit_beta_OS_Legionella_pneumophila_OX_446_GN_rpoB_PE_3_SV_1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_O86094_RPOB_LEGPN_4ljz_I/4ljz_I.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/sp_O86094_RPOB_LEGPN_4ljz_I/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: sp_O86094_RPOB_LEGPN_DNA-directed_RNA_polymerase_subunit_beta_OS_Legionella_pneumophila_OX_446_GN_rpoB_PE_3_SV_1
# 2: 4ljz_I_mol_protein_length_1342__DNA-directed_RNA_polymerase_subunit_beta
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity:     941/1370 (68.7%)
# Similarity:  1132/1370 (82.6%)
# Gaps:          32/1370 ( 2.3%)
# Score: 4895.5
# 
#
#=======================================

sp_O86094_RPO      1 MAVAEAKPQYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDT     50
                              ||:.||||.||.|||:..::.:|.||.|||.|::.|::.| 
4ljz_I_mol_pr      1 ---------YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD-     40

sp_O86094_RPO     51 KLSEQLNTGLHAAFSSVFPIESFSGNARLEYVGYKLGEPAFDVRECKLRG    100
                        .:...||.|||.|||||:|:|||:.|:||.|:||||.|||:||::||
4ljz_I_mol_pr     41 ---PEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRG     87

sp_O86094_RPO    101 LTYSAPLRVKIRLVVLDKDASDDPKPIKDIREQDVFMGEIPLMTDVGTFV    150
                     :|||||||||:|||:.:::|.:.  .:|||:||:|:|||||||||.||||
4ljz_I_mol_pr     88 VTYSAPLRVKLRLVIYEREAPEG--TVKDIKEQEVYMGEIPLMTDNGTFV    135

sp_O86094_RPO    151 VNGTERVVVSQLHRSPGVIFEHDKGKTHSSGKLLYSARIIPYRGSWLDFE    200
                     :||||||:||||||||||.|:.||||||||||:||:||||||||||||||
4ljz_I_mol_pr    136 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE    185

sp_O86094_RPO    201 FDPKDCVYVRIDRRRKLPVTILLRALGYEAEDILSEFFETTRCHLKNGEY    250
                     |||||.::||||||||||.||:||||.|..|.||..|||.....:::.:.
4ljz_I_mol_pr    186 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL    235

sp_O86094_RPO    251 HIDLIPQRLRGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDL    300
                     .::|:|:|||||.|||||..  .|::.||:|||||||||:|:||..::.:
4ljz_I_mol_pr    236 QMELVPERLRGETASFDIEA--NGKVYVEKGRRITARHIRQLEKDDVKLI    283

sp_O86094_RPO    301 VVPRDYLIGKTLAKNIIDTSTGEFLAQANDEITEELLDAMANHGILQIDM    350
                     .||.:|:.||.:||:.||.||||.:..||.|::.:||..::..|..:|:.
4ljz_I_mol_pr    284 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET    333

sp_O86094_RPO    351 IYTNDLDHGSYISDTLKIDPTGSQLEALVEIYRMMRPGEPPTKEAAEALF    400
                     ::|||||||.|||:||::|||..:|.||||||||||||||||:||||:||
4ljz_I_mol_pr    334 LFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF    383

sp_O86094_RPO    401 KNLFFVEERYDLSAVGRMKFNRRVGIKSDEGPGTLTKEDILSVIKTLIDI    450
                     :||||.|:||||||||||||||.:..:..||.|.|:|:||:.|:|.||||
4ljz_I_mol_pr    384 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI    433

sp_O86094_RPO    451 RNGIGMVDDIDHLGNRRVRSVGEMTENQFRVGLVRVERAVKERLSLVESE    500
                     |||.|.|||||||||||:||||||.|||||||||||||||||||||.:.:
4ljz_I_mol_pr    434 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD    483

sp_O86094_RPO    501 NLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSALGP    550
                     .|||||:|||||:|||:|||||||||||||||.||||.:|||||:|||||
4ljz_I_mol_pr    484 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP    533

sp_O86094_RPO    551 GGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYG    600
                     ||||||||||||||||.|||||||||||||||||||||||||||:|||||
4ljz_I_mol_pr    534 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG    583

sp_O86094_RPO    601 FIETPCRKVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVP    650
                     |:|||.|||.:|.||||:.|||||||.:..|||:|..||.:|:.:.|||.
4ljz_I_mol_pr    584 FLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT    633

sp_O86094_RPO    651 CRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNM    700
                     ||.:.|.||.:.|:::|||||.:|:|||.||||||||||||||||||:||
4ljz_I_mol_pr    634 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM    683

sp_O86094_RPO    701 QRQAVPTLRSEKPLVGTGMERIVASDSGVSVVAKRGGVIDLVDASRIVVR    750
                     |||||||||::||||||||||.||.||||:.|||||||:..|||||||::
4ljz_I_mol_pr    684 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK    733

sp_O86094_RPO    751 VNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVSTGDRIQRGDVLAD    800
                     ||:||...||.|:||||||||.||||:|||||.|.||.|:.::|||||||
4ljz_I_mol_pr    734 VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD    783

sp_O86094_RPO    801 GPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHDDRFTTIHIEE    850
                     ||.||:||||||||:.||||||||||||||||:|||:|.:||||||||:|
4ljz_I_mol_pr    784 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE    833

sp_O86094_RPO    851 LTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVG    900
                     |.|::||||||.||||||||||||:|||.|||||:|||||||..||||||
4ljz_I_mol_pr    834 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG    883

sp_O86094_RPO    901 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFT    950
                     ||||||||||||||||||||||||||||||||||||:|::||||||||||
4ljz_I_mol_pr    884 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT    933

sp_O86094_RPO    951 RDGLEKDARAKSIEEEHLARVRKDLIDERRIREEDIYHRVSHLLLDKVAT   1000
                     |||:|||.||..|||..|.:.:|||.:|.:|.|..::.|:..:|:    .
4ljz_I_mol_pr    934 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV----A    979

sp_O86094_RPO   1001 GGPGSLKPGSKITQDYLDKVEREKWFDIRIEDDAVSQQLEQLSKQLELLT   1050
                     ||         :..:.|||:.|::|.::.:.|:....|||||::|.:.|.
4ljz_I_mol_pr    980 GG---------VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK   1020

sp_O86094_RPO   1051 KEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN   1100
                     .|.||:....|:||.|||||||||||||||||||||||||||||||||||
4ljz_I_mol_pr   1021 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN   1070

sp_O86094_RPO   1101 KGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQVLETHLGLAAK   1150
                     |||||.:.|:||||:.|:||.||||||||||||||||||:||||||:|||
4ljz_I_mol_pr   1071 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK   1120

sp_O86094_RPO   1151 GLGRKIAQMLDERQTPEAIKAYLEKIYN--HDGVQRVNLKCLNDDELMTL   1198
                     |:|.||..||.::|....::.::::.|:  .|..|:|:|...:|:|:|.|
4ljz_I_mol_pr   1121 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL   1170

sp_O86094_RPO   1199 ADNLRAGVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFD   1248
                     |:|||.|:|:||||||||.|.|||.:|:|.|||..|:..|.|||||.:|:
4ljz_I_mol_pr   1171 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE   1220

sp_O86094_RPO   1249 NPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE   1298
                     .|||||||||||||||||||||||||||||||||||||||||||||||||
4ljz_I_mol_pr   1221 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE   1270

sp_O86094_RPO   1299 MEVWALEAYGAAYTLQEMLTVKSDDVGGRTKIYKNIVDGDHRMDPGMPES   1348
                     ||||||||||||||||||||||||||.||||:|||||||:|:|:||||||
4ljz_I_mol_pr   1271 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES   1320

sp_O86094_RPO   1349 FNVLLKEIRALGIDIELEHD   1368
                     |||||||||:|||:||||.:
4ljz_I_mol_pr   1321 FNVLLKEIRSLGINIELEDE   1340


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