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# Program: needle
# Rundate: Wed 30 May 2018 12:15:09
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/sp_O54297_RS4_SALTY_4v6c_AD/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_O54297_RS4_SALTY_4v6c_AD/sp_O54297_RS4_SALTY_30S_ribosomal_protein_S4_OS_Salmonella_typhimurium_strain_LT2__SGSC1412__ATCC_700720_OX_99287_GN_rpsD_PE_1_SV_3.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_O54297_RS4_SALTY_4v6c_AD/4v6c_C.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/sp_O54297_RS4_SALTY_4v6c_AD/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: sp_O54297_RS4_SALTY_30S_ribosomal_protein_S4_OS_Salmonella_typhimurium_strain_LT2__SGSC1412__ATCC_700720_OX_99287_GN_rpsD_PE_1_SV_3
# 2: 4v6c_C_mol_protein_length_206__30S_ribosomal_protein_S4
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 206
# Identity:     204/206 (99.0%)
# Similarity:   205/206 (99.5%)
# Gaps:           1/206 ( 0.5%)
# Score: 1030.0
# 
#
#=======================================

sp_O54297_RS4      1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSD     50
                      |||||||||||||||||||||||||||||||||||||||||||||||||
4v6c_C_mol_pr      1 -ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSD     49

sp_O54297_RS4     51 YGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDN    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
4v6c_C_mol_pr     50 YGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDN     99

sp_O54297_RS4    101 VVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
4v6c_C_mol_pr    100 VVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK    149

sp_O54297_RS4    151 KQSRVKAALELAEQREKPTWLEVDAGKMEGTYKRKPERSDLSADINEHLI    200
                     |||||||||||||||||||||||||||||||:||||||||||||||||||
4v6c_C_mol_pr    150 KQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLI    199

sp_O54297_RS4    201 VELYSK    206
                     ||||||
4v6c_C_mol_pr    200 VELYSK    205


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