######################################## # Program: needle # Rundate: Wed 30 May 2018 12:26:37 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid60_90/sp_O34847_ACCA_BACSU_2f9i_C/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_O34847_ACCA_BACSU_2f9i_C/sp_O34847_ACCA_BACSU_Acetyl-coenzyme_A_carboxylase_carboxyl_transferase_subunit_alpha_OS_Bacillus_subtilis_strain_168_OX_224308_GN_accA_PE_1_SV_1.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_O34847_ACCA_BACSU_2f9i_C/2f9i_C.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/sp_O34847_ACCA_BACSU_2f9i_C/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: sp_O34847_ACCA_BACSU_Acetyl-coenzyme_A_carboxylase_carboxyl_transferase_subunit_alpha_OS_Bacillus_subtilis_strain_168_OX_224308_GN_accA_PE_1_SV_1 # 2: 2f9i_C_mol_protein_length_327__acetyl-coenzyme_A_carboxylase_carboxyl_transferase_subunit_alpha # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 325 # Identity: 196/325 (60.3%) # Similarity: 234/325 (72.0%) # Gaps: 28/325 ( 8.6%) # Score: 979.5 # # #======================================= sp_O34847_ACC 1 MAPRLEFEKPVIELQTKIAELKKFTQDSDMDLSAEIERLEDRLAKLQDDI 50 .|:||||:.|::.||.:: |.|.:||...: | 2f9i_C_mol_pr 1 ---MLDFEKPLFEIRNKIEDM----------LEASLERETKK-------I 30 sp_O34847_ACC 51 YKNLKPWDRVQIARLADRPTTLDYIEHLFTDFFECHGDRAYGDDEAIVGG 100 |.|||||||||||||.:||||||||.::|..|.|.||||.:.||.|::|| 2f9i_C_mol_pr 31 YTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGG 80 sp_O34847_ACC 101 IAKFHGLPVTVIGHQRGKDTKENLVRNFGMPHPEGYRKALRLMKQADKFN 150 |...:|..|||||.|||||||:|:.|||||.|||||||||||||||:||| 2f9i_C_mol_pr 81 IGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN 130 sp_O34847_ACC 151 RPIICFIDTKGAYPGRAAEERGQSEAIAKNLFEMAGLRVPVICIVIGEGG 200 |||..||||||||||:|||||||||:||.||.|||.|:||||.||||||| 2f9i_C_mol_pr 131 RPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGG 180 sp_O34847_ACC 201 SGGALGLGVGNHLHMLENSTYSVISPEGAAALLWKDSSLAKKAAETMKIT 250 ||||||:|:.|.:.|||||||||||||||||||||||:|||.|||||||| 2f9i_C_mol_pr 181 SGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKIT 230 sp_O34847_ACC 251 APDLKELGIIDHMIKEVKGGAHHDVKLQASYMDETLKQSLKTLLKLSEEE 300 |.|:|:|||||.:|.|..||||.|::.||..:.......|.:|..||.:| 2f9i_C_mol_pr 231 AHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRDE 280 sp_O34847_ACC 301 LVQQRYEKYKAIGKVSVEDQYIGVN 325 :...|:||::.||.. :| 2f9i_C_mol_pr 281 IANDRFEKFRNIGSY-IE------- 297 #--------------------------------------- #---------------------------------------