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# Program: needle
# Rundate: Wed 30 May 2018 11:36:35
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/sp_B0SSI2_RS12_LEPBP_1vy5_AL/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_B0SSI2_RS12_LEPBP_1vy5_AL/sp_B0SSI2_RS12_LEPBP_30S_ribosomal_protein_S12_OS_Leptospira_biflexa_serovar_Patoc_strain_Patoc_1__ATCC_23582__Paris_OX_456481_GN_rpsL_PE_3_SV_1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/sp_B0SSI2_RS12_LEPBP_1vy5_AL/1vy5_L.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/sp_B0SSI2_RS12_LEPBP_1vy5_AL/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: sp_B0SSI2_RS12_LEPBP_30S_ribosomal_protein_S12_OS_Leptospira_biflexa_serovar_Patoc_strain_Patoc_1__ATCC_23582__Paris_OX_456481_GN_rpsL_PE_3_SV_1
# 2: 1vy5_L_mol_protein_length_132__30S_ribosomal_protein_S12
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 124
# Identity:      93/124 (75.0%)
# Similarity:   103/124 (83.1%)
# Gaps:           2/124 ( 1.6%)
# Score: 487.0
# 
#
#=======================================

sp_B0SSI2_RS1      1 MPTINQLIRIGREDQKKRTKSPALKACPQRRGVCTRVMTFTPKKPNSALR     50
                      ||||||:|.|||..:|::|.||||..|.||||||.|.|.||||||||||
1vy5_L_mol_pr      1 -PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALR     49

sp_B0SSI2_RS1     51 KVARVRLTTGIEVTAYIPGEGHNLQEHNVVLIRGGRVKDLPGVRYHIIRG    100
                     |||:||||:|.||||||||||||||||:|||||||||||||||||||:||
1vy5_L_mol_pr     50 KVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRG     99

sp_B0SSI2_RS1    101 TLDTLGVDKRRKGRSKYGAKRPKA    124
                     ..|..||..|:|.|||||.|:|| 
1vy5_L_mol_pr    100 VYDAAGVKDRKKSRSKYGTKKPK-    122


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