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# Program: needle
# Rundate: Wed 30 May 2018 11:40:02
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_208874.1_ARO_3003930_rpsJ_3w1y_C/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_208874.1_ARO_3003930_rpsJ_3w1y_C/gb_YP_208874.1_ARO_3003930_rpsJ__Neisseria_gonorrhoeae_FA_1090.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_208874.1_ARO_3003930_rpsJ_3w1y_C/3w1y_C.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_208874.1_ARO_3003930_rpsJ_3w1y_C/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_YP_208874.1_ARO_3003930_rpsJ__Neisseria_gonorrhoeae_FA_1090
# 2: 3w1y_C_mol_protein_length_103__30S_ribosomal_protein_S10
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 103
# Identity:      62/103 (60.2%)
# Similarity:    77/103 (74.8%)
# Gaps:          13/103 (12.6%)
# Score: 298.0
# 
#
#=======================================

gb_YP_208874.      1 MANQKIRIRLKAYDYALIDRSAQEIVETAKRTGAVVKGPIPLPTKIERFN     50
                         :|||||||:|:.|||::..|||||||||||.|:|||||||:.|||.
3w1y_C_mol_pr      1 ----RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFT     46

gb_YP_208874.     51 ILRSPHVNKTSREQLEIRTHLRLMDIVDWTDKTTDALMKLDLPAGVDVEI    100
                     :|         .:|.||||||||:|||:.|:||.||||:|||.|||||:|
3w1y_C_mol_pr     47 VL---------IDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQI     87

gb_YP_208874.    101 KVQ    103
                     .:.
3w1y_C_mol_pr     88 SLG     90


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