########################################
# Program: needle
# Rundate: Wed 30 May 2018 13:30:46
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_YP_208330.1_ARO_3003929_Neisseria_1zvu_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_YP_208330.1_ARO_3003929_Neisseria_1zvu_A/gb_YP_208330.1_ARO_3003929_Neisseria_gonorrhoeae_parC_conferring_resistance_to_fluoroquinolone__Neisseria_gonorrhoeae_FA_1090.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_YP_208330.1_ARO_3003929_Neisseria_1zvu_A/1zvu_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_YP_208330.1_ARO_3003929_Neisseria_1zvu_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_YP_208330.1_ARO_3003929_Neisseria_gonorrhoeae_parC_conferring_resistance_to_fluoroquinolone__Neisseria_gonorrhoeae_FA_1090
# 2: 1zvu_A_mol_protein_length_716__Topoisomerase_IV_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 779
# Identity:     318/779 (40.8%)
# Similarity:   446/779 (57.3%)
# Gaps:         106/779 (13.6%)
# Score: 1444.5
# 
#
#=======================================

gb_YP_208330.      1 MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQR     50
                                                       .||||.:.||.|||||
1zvu_A_mol_pr      1 ----------------------------------DRALPFIGDGLKPVQR     16

gb_YP_208330.     51 RILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDF    100
                     ||::||.::||          |.||::||||||||||:.|||||.|||.|
1zvu_A_mol_pr     17 RIVYAMSELGL----------RTVGDVLGKYHPHGDSACYEAMVLMAQPF     56

gb_YP_208330.    101 TLRYPLIDGIGNFGSRDGDGA-AAMRYTEARLTPIAELLLSEINQGTVDF    149
                     :.||||:||.||:|:.|...: |||||||:||:..:||||||:.|||.|:
1zvu_A_mol_pr     57 SYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADW    106

gb_YP_208330.    150 MPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAI    199
                     :||:||...||..||||||.:||||.:||||||||:||.|||.||.||||
1zvu_A_mol_pr    107 VPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI    156

gb_YP_208330.    200 ALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRA    249
                     ||:.:|......|:..:..||:....:|||...|:|:|||.|:||||:||
1zvu_A_mol_pr    157 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA    206

gb_YP_208330.    250 RYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQD    299
                     .::.|..|     |:::.||...:.|::|.:|..|               
1zvu_A_mol_pr    207 VWKKEDGA-----VVISALPHQVSGARVLEQIAAQ---------------    236

gb_YP_208330.    300 RLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTS    349
                      :..||  |.::|.:|||||.|:|.|||..|:|:|:|.|..:|.|.|.|.
1zvu_A_mol_pr    237 -MRNKK--LPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTD    283

gb_YP_208330.    350 LEGNVSMNLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVE    399
                     ||.:..:||.|:|||.|||.|||..||.|||.||..||.|||.:||.:|.
1zvu_A_mol_pr    284 LEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL    333

gb_YP_208330.    400 KRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFGLTEIQAEDILEI    449
                     ||||||||.|..||:|||||::||..|:||..||:.|||||.|||.|||:
1zvu_A_mol_pr    334 KRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILEL    383

gb_YP_208330.    450 RLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLIIKEMQADMK    499
                     :||.||:||..|:..|.:||.:|:.:|...|..|.:...|:.||:|||.:
1zvu_A_mol_pr    384 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ    433

gb_YP_208330.    500 QFGDARRTLVEEAGRAVLT---QTAADEPITLILSEKGWIRSRAGHNLDL    546
                     .:||.||:.::|...|...   .....||:|::||:.||:||..|     
1zvu_A_mol_pr    434 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKG-----    478

gb_YP_208330.    547 SQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPV    596
                               .|..::|::..|||.:||:||:|:||...:|..|   .|:
1zvu_A_mol_pr    479 ----------FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR---EPL    515

gb_YP_208330.    597 SSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKV    646
                     :..:.|..||....||....:|..|::|..||||:....|:|.|.:|||.
1zvu_A_mol_pr    516 TGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKA    565

gb_YP_208330.    647 VMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAK    696
                     ::|......|:|||.:..:|.:     ::|.|...|.|.||:.:|..::|
1zvu_A_mol_pr    566 LITLPENAHVMPPVVIEDASDM-----LLAITQAGRMLMFPVSDLPQLSK    610

gb_YP_208330.    697 GKGLQIIGLNAGES------MTHTAVSSEPEILIESEGRRGAAHKDRLPV    740
                     |||.:||.:.:.|:      :....|......|....|:|    |.:|..
1zvu_A_mol_pr    611 GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR----KIKLRP    656

gb_YP_208330.    741 ALIEAKRGKKGRLLPISGSLKQLSSPK--    767
                     ..::...|::||...:...|:::...:  
1zvu_A_mol_pr    657 EELQKVTGERGRRGTLMRGLQRIDRVEID    685


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