########################################
# Program: needle
# Rundate: Wed 30 May 2018 13:07:25
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_207769.1_ARO_3003928_Neisseria_4ckk_C/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_207769.1_ARO_3003928_Neisseria_4ckk_C/gb_YP_207769.1_ARO_3003928_Neisseria_gonorrhoeae_gyrA_conferring_resistance_to_fluoroquinolones__Neisseria_gonorrhoeae_FA_1090.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_207769.1_ARO_3003928_Neisseria_4ckk_C/4ckk_C.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_207769.1_ARO_3003928_Neisseria_4ckk_C/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_YP_207769.1_ARO_3003928_Neisseria_gonorrhoeae_gyrA_conferring_resistance_to_fluoroquinolones__Neisseria_gonorrhoeae_FA_1090
# 2: 4ckk_C_mol_protein_length_493__DNA_GYRASE_SUBUNIT_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 916
# Identity:     295/916 (32.2%)
# Similarity:   376/916 (41.0%)
# Gaps:         432/916 (47.2%)
# Score: 1513.0
# 
#
#=======================================

gb_YP_207769.      1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLK     50
                                                             ||||||||||
4ckk_C_mol_pr      1 ----------------------------------------ALPDVRDGLK     10

gb_YP_207769.     51 PVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRM    100
                     ||||||||||:.|.|:||.|||||||:|||||||||||||||||||||||
4ckk_C_mol_pr     11 PVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRM     60

gb_YP_207769.    101 AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEET    150
                     ||.|::||:|:||||||||:||.:||||||||||:|||:||::||:|:||
4ckk_C_mol_pr     61 AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKET    110

gb_YP_207769.    151 VNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDTIN    200
                     |:|..||||:|..|.|:||:.|.||||||||||   ||||||||||:.||
4ckk_C_mol_pr    111 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA---ATNIPPHNLTEVIN    157

gb_YP_207769.    201 ACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREGYKTGRGRVVI    250
                     .||..:|:....|:.|::.|..|||||.|.|.|..|:.|.|:||||:|.|
4ckk_C_mol_pr    158 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI    207

gb_YP_207769.    251 RGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE    300
                     |.:..:|...|.| ||.|::.|||||||||:|:|||.:||:||.:||||.
4ckk_C_mol_pr    208 RARAEVEVDAKTG-RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISA    256

gb_YP_207769.    301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ    350
                     |||||||.|||:|||:||:...|||||.||..|.||.|||||||.|..||
4ckk_C_mol_pr    257 LRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ    306

gb_YP_207769.    351 PRLLNLKQILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNID    400
                     |:::|||.|::.|:|||||||||||:|.|:|||...||.|..||||:|||
4ckk_C_mol_pr    307 PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANID    356

gb_YP_207769.    401 EIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAA    450
                     .||:||:.:|..||||..|:|.||:...|..|     |:.:..|||.|..
4ckk_C_mol_pr    357 PIIELIRHAPTPAEAKTALVANPWQLGNVAAM-----LEDDAARPEWLEP    401

gb_YP_207769.    451 NIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKIIDFV    500
                     ..|::...|||:|.||.|||.:.|:.||||:.:::::.||.|:.:|.:.:
4ckk_C_mol_pr    402 EFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL    451

gb_YP_207769.    501 DILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREM    550
                     .||...:|:.::||:|||.::..:||:||:||.                 
4ckk_C_mol_pr    452 RILGSADRLMEVIREELELVREQFGDKRRTEIT-----------------    484

gb_YP_207769.    551 VVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY    600
                                                                       
4ckk_C_mol_pr    484 --------------------------------------------------    484

gb_YP_207769.    601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE    650
                                                                       
4ckk_C_mol_pr    484 --------------------------------------------------    484

gb_YP_207769.    651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTG    700
                                                                       
4ckk_C_mol_pr    484 --------------------------------------------------    484

gb_YP_207769.    701 GADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNE    750
                                                                       
4ckk_C_mol_pr    484 --------------------------------------------------    484

gb_YP_207769.    751 NTLPSGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLT    800
                                                                       
4ckk_C_mol_pr    484 --------------------------------------------------    484

gb_YP_207769.    801 ATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLM    850
                                                                       
4ckk_C_mol_pr    484 --------------------------------------------------    484

gb_YP_207769.    851 LITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDESEL    900
                                                                       
4ckk_C_mol_pr    484 --------------------------------------------------    484

gb_YP_207769.    901 SGASVISNVTEPEAEN    916
                                     
4ckk_C_mol_pr    484 ----------------    484


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