######################################## # Program: needle # Rundate: Wed 30 May 2018 10:24:06 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_040771.1_ARO_3003315_Staphylococcus_4i3h_B/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_040771.1_ARO_3003315_Staphylococcus_4i3h_B/gb_YP_040771.1_ARO_3003315_Staphylococcus_aureus_parE_conferring_resistance_to_fluoroquinolones__Staphylococcus_aureus_subsp._aureus_MRSA252.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_040771.1_ARO_3003315_Staphylococcus_4i3h_B/4i3h_B.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_040771.1_ARO_3003315_Staphylococcus_4i3h_B/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: gb_YP_040771.1_ARO_3003315_Staphylococcus_aureus_parE_conferring_resistance_to_fluoroquinolones__Staphylococcus_aureus_subsp._aureus_MRSA252 # 2: 4i3h_B_mol_protein_length_1144__Topoisomerase_IV_subunit_B,_DNA_topoisomerase_4_subunit_A_chimera # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1127 # Identity: 392/1127 (34.8%) # Similarity: 477/1127 (42.3%) # Gaps: 554/1127 (49.2%) # Score: 1942.5 # # #======================================= gb_YP_040771. 1 MAMNKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNS 50 |||:||||||||||||||..||||||:|||||: 4i3h_B_mol_pr 1 -----------------EGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNA 33 gb_YP_040771. 51 VDEVLNGYGNEIDVTINKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVL 100 |||.|:|: :.||||||||||::::|: |||||||:| 4i3h_B_mol_pr 34 VDEALSGF-DRIDVTINKDGSLTVQDH--------------TVEVIFTIL 68 gb_YP_040771. 101 HAGGKFGQGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQSFKNG 150 |||||| |||:|||||||.||||||.|||.:|.|.|:|| 4i3h_B_mol_pr 69 HAGGKF------------GVGSSVVNALSSWLEVEITRDGAVYKQRFENG 106 gb_YP_040771. 151 GSPSSGLVKKGKTKKTGTKVTFKPDDTIFKASTSFNFDVLSERLQESAFL 200 |.|.:.|.|.|...||||||||.||.||| ::|.|.::.:||||.||||| 4i3h_B_mol_pr 107 GKPVTTLKKIGTAPKTGTKVTFMPDATIF-STTDFKYNTISERLNESAFL 155 gb_YP_040771. 201 LKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDVATFSGE 250 |||:.::|.|.|: :....:|||.|:::||||:||.||:|..|..|.|| 4i3h_B_mol_pr 156 LKNVTLSLTDKRT--DEAIEFHYENGVQDFVSYLNEDKEILTPVLYFEGE 203 gb_YP_040771. 251 ANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 300 .||.:|:||.||||.:|::|||||||||||||||||.|.|:|:|:|.||| 4i3h_B_mol_pr 204 DNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDY 253 gb_YP_040771. 301 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSE 350 || ||...||:|:|.||||.||:|:.:|||.||||||||.|||:.. 4i3h_B_mol_pr 254 AR-----KTGLLNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPL 298 gb_YP_040771. 351 ARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARS 400 ||..||.:|||||.|:|.|.|:|:.:|::|||||:.|||||||||:: 4i3h_B_mol_pr 299 ARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDE--- 345 gb_YP_040771. 401 GKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQA 450 |||||||||||..|||||||||||||||||.|||||||| 4i3h_B_mol_pr 346 -----------SGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQA 384 gb_YP_040771. 451 ILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNYNRV 500 |||||||||||.||::.||.|||||||:|:|||||||.||.|||:||::: 4i3h_B_mol_pr 385 ILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKI 434 gb_YP_040771. 501 IIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGK 550 ||||||||||||||.||||||::||:|||:||.|:||||||||: 4i3h_B_mol_pr 435 IIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM------ 478 gb_YP_040771. 551 TKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETR 600 ||||.||.:| |||||||||||.:|||||||||||| 4i3h_B_mol_pr 479 ------AWTDGELEEL---------LQRYKGLGEMNADQLWETTMNPETR 513 gb_YP_040771. 601 TLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIEKHFEFGMQEDQSILDNS 650 |||||.:||..|:.:||..||||||:|||:|||.:.:| .|.:.|. 4i3h_B_mol_pr 514 TLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKF-----TSNIQNM 558 gb_YP_040771. 651 EVQVLENDQFDEEEI----------------------------------- 665 .::.:..::|..... 4i3h_B_mol_pr 559 SLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDK 608 gb_YP_040771. 665 -------------------------------------------------- 665 4i3h_B_mol_pr 609 SYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGS 658 gb_YP_040771. 665 -------------------------------------------------- 665 4i3h_B_mol_pr 659 MDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPA 708 gb_YP_040771. 665 -------------------------------------------------- 665 4i3h_B_mol_pr 709 AFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEF 758 gb_YP_040771. 665 -------------------------------------------------- 665 4i3h_B_mol_pr 759 LPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVIT 808 gb_YP_040771. 665 -------------------------------------------------- 665 4i3h_B_mol_pr 809 EIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDAN 858 gb_YP_040771. 665 -------------------------------------------------- 665 4i3h_B_mol_pr 859 TELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVI 908 gb_YP_040771. 665 -------------------------------------------------- 665 4i3h_B_mol_pr 909 LARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKV 958 gb_YP_040771. 665 -------------------------------------------------- 665 4i3h_B_mol_pr 959 SYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDER 1008 gb_YP_040771. 665 --------------------------- 665 4i3h_B_mol_pr 1009 TMYNLMKKELREVKKKFATPRLSSLED 1035 #--------------------------------------- #---------------------------------------