########################################
# Program: needle
# Rundate: Wed 30 May 2018 13:14:26
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_039483.1_ARO_3003296_Staphylococcus_6fqv_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_039483.1_ARO_3003296_Staphylococcus_6fqv_A/gb_YP_039483.1_ARO_3003296_Staphylococcus_aureus_gyrA_conferring_resistance_to_fluoroquinolones__Staphylococcus_aureus_subsp._aureus_MRSA252.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_039483.1_ARO_3003296_Staphylococcus_6fqv_A/6fqv_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_039483.1_ARO_3003296_Staphylococcus_6fqv_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_YP_039483.1_ARO_3003296_Staphylococcus_aureus_gyrA_conferring_resistance_to_fluoroquinolones__Staphylococcus_aureus_subsp._aureus_MRSA252
# 2: 6fqv_A_mol_protein_length_490__DNA_gyrase_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 886
# Identity:     479/886 (54.1%)
# Similarity:   480/886 (54.2%)
# Gaps:         404/886 (45.6%)
# Score: 2406.0
# 
#
#=======================================

gb_YP_039483.      1 MAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRIL     50
                              |||||||||||||||||||||||||||||||||||||||||
6fqv_A_mol_pr      1 ---------NERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRIL     41

gb_YP_039483.     51 YGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYR    100
                     |||||||||||||||||||||||||||||||||.||||||||||||||||
6fqv_A_mol_pr     42 YGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYR     91

gb_YP_039483.    101 YPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNY    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
6fqv_A_mol_pr     92 YPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNY    141

gb_YP_039483.    151 DGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSK    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
6fqv_A_mol_pr    142 DGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSK    191

gb_YP_039483.    201 NPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIE    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
6fqv_A_mol_pr    192 NPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIE    241

gb_YP_039483.    251 ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
6fqv_A_mol_pr    242 ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRT    291

gb_YP_039483.    301 GVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKE    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
6fqv_A_mol_pr    292 GVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKE    341

gb_YP_039483.    351 ALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRE    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
6fqv_A_mol_pr    342 ALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRE    391

gb_YP_039483.    401 SETDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLN    450
                     |:||||||||||||||||||||||||||||||||||||||||||||||||
6fqv_A_mol_pr    392 SDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLN    441

gb_YP_039483.    451 YISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDED    500
                     ||||||.||||||||||||||||||||||||||||||||||         
6fqv_A_mol_pr    442 YISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLG---------    482

gb_YP_039483.    501 LIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLV    550
                                                                       
6fqv_A_mol_pr    482 --------------------------------------------------    482

gb_YP_039483.    551 TLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIIS    600
                                                                       
6fqv_A_mol_pr    482 --------------------------------------------------    482

gb_YP_039483.    601 TMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDE    650
                                                                       
6fqv_A_mol_pr    482 --------------------------------------------------    482

gb_YP_039483.    651 LIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDE    700
                                                                       
6fqv_A_mol_pr    482 --------------------------------------------------    482

gb_YP_039483.    701 VVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITER    750
                                                                       
6fqv_A_mol_pr    482 --------------------------------------------------    482

gb_YP_039483.    751 NGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGD    800
                                                                       
6fqv_A_mol_pr    482 --------------------------------------------------    482

gb_YP_039483.    801 DQFVSTVAKVKEDADEENEDEQSTVSEDGTEQQREAVVNDETPGNAIHTE    850
                                                                       
6fqv_A_mol_pr    482 --------------------------------------------------    482

gb_YP_039483.    851 VIDSEVNDEDGRIEVRQDFMDRVEEDIQQSSDDDEE    886
                                                         
6fqv_A_mol_pr    482 ------------------------------------    482


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