########################################
# Program: needle
# Rundate: Wed 30 May 2018 15:03:23
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_YP_039482.1_ARO_3003301_Staphylococcus_4i3h_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_YP_039482.1_ARO_3003301_Staphylococcus_4i3h_A/gb_YP_039482.1_ARO_3003301_Staphylococcus_aureus_gyrB_conferring_resistance_to_aminocoumarin__Staphylococcus_aureus_subsp._aureus_MRSA252.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_YP_039482.1_ARO_3003301_Staphylococcus_4i3h_A/4i3h_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_YP_039482.1_ARO_3003301_Staphylococcus_4i3h_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_YP_039482.1_ARO_3003301_Staphylococcus_aureus_gyrB_conferring_resistance_to_aminocoumarin__Staphylococcus_aureus_subsp._aureus_MRSA252
# 2: 4i3h_A_mol_protein_length_1144__Topoisomerase_IV_subunit_B,_DNA_topoisomerase_4_subunit_A_chimera
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1132
# Identity:     301/1132 (26.6%)
# Similarity:   403/1132 (35.6%)
# Gaps:         583/1132 (51.5%)
# Score: 1430.0
# 
#
#=======================================

gb_YP_039482.      1 MVTALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWE     50
                                               |||||||||||||...||||||||
4i3h_A_mol_pr      1 --------------------------AVRKRPGMYIGSTDGAGLHHLVWE     24

gb_YP_039482.     51 IVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVE    100
                     ||||::||||   :::|:|.|.||..:.|.|:               .||
4i3h_A_mol_pr     25 IVDNAVDEAL---SDRIDVTINKDGSLTVQDH---------------TVE     56

gb_YP_039482.    101 VILTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSQDLEVYVHRNETIYH    150
                     ||.|:|||||||          |||||||||||||..|||.:.|:..:|.
4i3h_A_mol_pr     57 VIFTILHAGGKF----------LHGVGSSVVNALSSWLEVEITRDGAVYK     96

gb_YP_039482.    151 QAYKK-GVPQFDLKEVGTT--DKTGTVIRFKADGEIFTETTVYNYETLQQ    197
                     |.::. |.|...||::||.  .||||.:.|..|..||: ||.:.|.|:.:
4i3h_A_mol_pr     97 QRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFS-TTDFKYNTISE    145

gb_YP_039482.    198 RIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNENKEPI    247
                     |:.|.|||.|.:.::|.|:|.:|.:   .:|||.|::.:|..|||:||.:
4i3h_A_mol_pr    146 RLNESAFLLKNVTLSLTDKRTDEAI---EFHYENGVQDFVSYLNEDKEIL    192

gb_YP_039482.    248 HDEPIYIHQSKDD-IEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGF    296
                       .|:...:.:|: .:||:|:|||.|::.|:|::.||:.|.:|||||.|.
4i3h_A_mol_pr    193 --TPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGL    240

gb_YP_039482.    297 KRALTRVLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISI----KHGDPQ    342
                     |.|:|:|:|.|...:.::||.:    |.|.|||:.|::||    :|  .|
4i3h_A_mol_pr    241 KSAITKVMNDYARKTGLLKEKE----GSDYREGLAAVLSILVPEEH--LQ    284

gb_YP_039482.    343 FEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARA    392
                     ||||||.|||:...|.|||.:.::....||.||.::|..::.|.|.|..|
4i3h_A_mol_pr    285 FEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDA    334

gb_YP_039482.    393 RVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGS    442
                     |.||:|||               |||....||:|.:.|::||||||||||
4i3h_A_mol_pr    335 REAARKAR---------------GKLTPAQSKNPAKNELYLVEGDSAGGS    369

gb_YP_039482.    443 TKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGD    492
                     .|.|||.:.|||||||||::|..||::..||.|.||..||...|.|:|.|
4i3h_A_mol_pr    370 AKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGAD    419

gb_YP_039482.    493 FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP    542
                     |.:..|.|.||:||||||.|||||:|||||||||:||||:|||:||||.|
4i3h_A_mol_pr    420 FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALP    469

gb_YP_039482.    543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLW    592
                     ||||:::|...:    |.||::|:          :.||||||||||||||
4i3h_A_mol_pr    470 PLYKMSKGAYAW----DGELEELR----------LQRYKGLGEMNADQLW    505

gb_YP_039482.    593 ETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYA--    640
                     |||||||.|.|::|.:||...|::...:||||.||.||::||||..:.  
4i3h_A_mol_pr    506 ETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLE    555

gb_YP_039482.    641 ---NLDF-------------------------------------------    644
                        |:..                                           
4i3h_A_mol_pr    556 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDS    605

gb_YP_039482.    644 --------------------------------------------------    644
                                                                       
4i3h_A_mol_pr    606 NTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMH    655

gb_YP_039482.    644 --------------------------------------------------    644
                                                                       
4i3h_A_mol_pr    656 GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEP    705

gb_YP_039482.    644 --------------------------------------------------    644
                                                                       
4i3h_A_mol_pr    706 TVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKID    755

gb_YP_039482.    644 --------------------------------------------------    644
                                                                       
4i3h_A_mol_pr    756 KLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE    805

gb_YP_039482.    644 --------------------------------------------------    644
                                                                       
4i3h_A_mol_pr    806 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL    855

gb_YP_039482.    644 --------------------------------------------------    644
                                                                       
4i3h_A_mol_pr    856 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAH    905

gb_YP_039482.    644 --------------------------------------------------    644
                                                                       
4i3h_A_mol_pr    906 RREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAK    955

gb_YP_039482.    644 --------------------------------------------------    644
                                                                       
4i3h_A_mol_pr    956 ENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAI   1005

gb_YP_039482.    644 --------------------------------    644
                                                     
4i3h_A_mol_pr   1006 IGDERTMYNLMKKELREVKKKFATPRLSSLED   1037


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