########################################
# Program: needle
# Rundate: Wed 30 May 2018 10:22:17
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_006374661.1_ARO_3003438_Enterococcus_3u6b_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_006374661.1_ARO_3003438_Enterococcus_3u6b_A/gb_YP_006374661.1_ARO_3003438_Enterococcus_faecium_EF-Tu_mutants_conferring_resistance_to_GE2270A__Enterococcus_faecium_DO.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_006374661.1_ARO_3003438_Enterococcus_3u6b_A/3u6b_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_YP_006374661.1_ARO_3003438_Enterococcus_3u6b_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_YP_006374661.1_ARO_3003438_Enterococcus_faecium_EF-Tu_mutants_conferring_resistance_to_GE2270A__Enterococcus_faecium_DO
# 2: 3u6b_A_mol_protein_length_394__Elongation_factor_Tu_1
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 423
# Identity:     287/423 (67.8%)
# Similarity:   330/423 (78.0%)
# Gaps:          54/423 (12.8%)
# Score: 1519.0
# 
#
#=======================================

gb_YP_0063746      1 MGMWCTLCTSYTYQTNKKYIVFLGGHFKMAKEKFDRSKPHVNIGTIGHVD     50
                                                      |:|:|||||:|||||||
3u6b_A_mol_pr      1 ---------------------------------FERTKPHVNVGTIGHVD     17

gb_YP_0063746     51 HGKTTLTAAITTVLSKKNGGQAMAYDQIDGAPEERERGITISTAHVEYET    100
                     ||||||||||||||:|..||                |||||:|:||||:|
3u6b_A_mol_pr     18 HGKTTLTAAITTVLAKTYGG----------------RGITINTSHVEYDT     51

gb_YP_0063746    101 DTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL    150
                     .|||||||||||||||||||||||||||||||||:|.|||||||||||||
3u6b_A_mol_pr     52 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL    101

gb_YP_0063746    151 SRQVGVPYIVVFLNKVDMVDDEELLELVEMEVRDLLTEYEFPGDDVPVVA    200
                     .||||||||:|||||.|||||||||||||||||:||::|:|||||.|:|.
3u6b_A_mol_pr    102 GRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVR    151

gb_YP_0063746    201 GSALKALEGDASYEEKILELMAAVDEYIPTPERDNDKPFMMPVEDVFSIT    250
                     |||||||||||.:|.|||||...:|.|||.|||..||||::|:|||||| 
3u6b_A_mol_pr    152 GSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSI-    200

gb_YP_0063746    251 GRGTVATGRVERGQVRVGDEVEVVGIAEETSKTTVTGVEMFRKLLDYAEA    300
                        ||.|||||||.::||:|||:||| :||.|:|.|||||||||||...|
3u6b_A_mol_pr    201 ---TVVTGRVERGIIKVGEEVEIVGI-KETQKSTCTGVEMFRKLLDEGRA    246

gb_YP_0063746    301 GDNIGALLRGVAREDIQRGQVLAKPGTITPHTKFSAEVYVLTKEEGGRHT    350
                     |:|:|.||||:.||:|:|||||||||||.|||||.:|||:|:|:||||||
3u6b_A_mol_pr    247 GENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHT    296

gb_YP_0063746    351 PFFTNYRPQFYFRTTDVTGVVELPEGTEMVMPGDNVTMEVELIHPIAIEN    400
                     |||..||||||||||||||.:|||||.||||||||:.|.|.||||||:::
3u6b_A_mol_pr    297 PFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDD    346

gb_YP_0063746    401 GTKFSIREGGRTVGAGVVTEIKA    423
                     |.:|:|||||||||||||.::..
3u6b_A_mol_pr    347 GLRFAIREGGRTVGAGVVAKVLG    369


#---------------------------------------
#---------------------------------------