########################################
# Program: needle
# Rundate: Wed 30 May 2018 12:57:54
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_001086469.1_ARO_3003995_Clostridium_4ddq_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_001086469.1_ARO_3003995_Clostridium_4ddq_A/gb_YP_001086469.1_ARO_3003995_Clostridium_difficile_gyrA_conferring_resistance_to_fluoroquinolones__Clostridium_difficile_630.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_001086469.1_ARO_3003995_Clostridium_4ddq_A/4ddq_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_YP_001086469.1_ARO_3003995_Clostridium_4ddq_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_YP_001086469.1_ARO_3003995_Clostridium_difficile_gyrA_conferring_resistance_to_fluoroquinolones__Clostridium_difficile_630
# 2: 4ddq_A_mol_protein_length_502__DNA_gyrase_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 808
# Identity:     300/808 (37.1%)
# Similarity:   391/808 (48.4%)
# Gaps:         350/808 (43.3%)
# Score: 1607.0
# 
#
#=======================================

gb_YP_0010864      1 MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYS     50
                                                  .|||||||||||||||||||:
4ddq_A_mol_pr      1 -----------------------------SRALPDVRDGLKPVHRRILYA     21

gb_YP_0010864     51 MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRAL    100
                     |::|.:|.||||:|||||||:|:||||||||:|||.:||||||||:.|.:
4ddq_A_mol_pr     22 MNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYM     71

gb_YP_0010864    101 LVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDE    150
                     |||||||||||||||.||||||||:|||:|:|:||||.|:|:|::.|:|.
4ddq_A_mol_pr     72 LVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG    121

gb_YP_0010864    151 SLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNP    200
                     |.:||.|:|:|:|||||||:.||||||||:||||.|.|:||..:.:.:||
4ddq_A_mol_pr    122 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP    171

gb_YP_0010864    201 ECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKVRSRAFIEEL    250
                     :.::.:|::.:.|||||||..|:|:..|.:||.:|||.:.:|::|.||:.
4ddq_A_mol_pr    172 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQT    221

gb_YP_0010864    251 PKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMR    300
                     ..||::|||||:|||||||||:|:||:||::|:||||:||||||:|.|||
4ddq_A_mol_pr    222 SSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR    271

gb_YP_0010864    301 IVIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILY    350
                     ||||::||||||::||||||.:.::.:|.|.:||||||||:||.|||.|.
4ddq_A_mol_pr    272 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLE    321

gb_YP_0010864    351 HYIKHQEDVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKT    400
                     ||:.||:.|:.|||.:||.||||||||||||::|||::||||||||.|:|
4ddq_A_mol_pr    322 HYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQT    371

gb_YP_0010864    401 GQEAKLGLIEKFKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKIN    450
                     .:.|:.||||:|.|||.||||||||||||||||||:|||.||:.|:|.|.
4ddq_A_mol_pr    372 AEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIA    421

gb_YP_0010864    451 RLKEILADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISD    500
                     .||:|||:|..:|.:|::|:|.|||.::|||||||..             
4ddq_A_mol_pr    422 ELKDILANEYKVLEIIREELTEIKERFNDERRTEIVT-------------    458

gb_YP_0010864    501 EEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTT    550
                                                                       
4ddq_A_mol_pr    458 --------------------------------------------------    458

gb_YP_0010864    551 HSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIP    600
                                                                       
4ddq_A_mol_pr    458 --------------------------------------------------    458

gb_YP_0010864    601 IDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVE    650
                                                                       
4ddq_A_mol_pr    458 --------------------------------------------------    458

gb_YP_0010864    651 LTDGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMN    700
                                                                       
4ddq_A_mol_pr    458 --------------------------------------------------    458

gb_YP_0010864    701 LCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGA    750
                                                                       
4ddq_A_mol_pr    458 --------------------------------------------------    458

gb_YP_0010864    751 DMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSI    800
                                                                       
4ddq_A_mol_pr    458 --------------------------------------------------    458

gb_YP_0010864    801 AKINIEEE    808
                             
4ddq_A_mol_pr    458 --------    458


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