########################################
# Program: needle
# Rundate: Wed 30 May 2018 10:27:59
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_WP_041918279.1_ARO_3003925_Haemophilus_1zvu_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_WP_041918279.1_ARO_3003925_Haemophilus_1zvu_A/gb_WP_041918279.1_ARO_3003925_Haemophilus_parainfluenzae_parC_conferring_resistance_to_fluoroquinolones__Haemophilus_parainfluenzae.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_WP_041918279.1_ARO_3003925_Haemophilus_1zvu_A/1zvu_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_WP_041918279.1_ARO_3003925_Haemophilus_1zvu_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_WP_041918279.1_ARO_3003925_Haemophilus_parainfluenzae_parC_conferring_resistance_to_fluoroquinolones__Haemophilus_parainfluenzae
# 2: 1zvu_A_mol_protein_length_716__Topoisomerase_IV_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 751
# Identity:     481/751 (64.0%)
# Similarity:   587/751 (78.2%)
# Gaps:          66/751 ( 8.8%)
# Score: 2506.0
# 
#
#=======================================

gb_WP_0419182      1 MSNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIV     50
                                                    |||||||||||||||||||
1zvu_A_mol_pr      1 -------------------------------DRALPFIGDGLKPVQRRIV     19

gb_WP_0419182     51 YAMSELGLNAAAKFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYR    100
                     ||||||||          |||||||||:||||||||||||||||||||||
1zvu_A_mol_pr     20 YAMSELGL----------RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYR     59

gb_WP_0419182    101 YPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISEILLSELGQGTVDFQPN    150
                     |||||||||||||||||||||||||||||||.||:|||||||||.|:.||
1zvu_A_mol_pr     60 YPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPN    109

gb_WP_0419182    151 FDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEVADAAVMLL    200
                     |||||:||:.||||||:|||||||||||||||||||||:.|||.||:.|:
1zvu_A_mol_pr    110 FDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI    159

gb_WP_0419182    201 DNPKAGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMRATWH    250
                     |.||..||.:|:|:||||:|||||||:.:.:|||:||.||||::|||.|.
1zvu_A_mol_pr    160 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK    209

gb_WP_0419182    251 KEDGEIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVR    300
                     ||||.::|||||||.|.::::.|||.||..||||||:|:|||:|:|||.|
1zvu_A_mol_pr    210 KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR    259

gb_WP_0419182    301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQV    350
                     :|:||||||||.|.:|.|||||||||||||:|:||||||.:||||.||::
1zvu_A_mol_pr    260 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEI    309

gb_WP_0419182    351 LIEWLTFRRTTVTRRLQHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTE    400
                     |.|||.|||.||.|||.:||:|||.|||||:||::|||||||||||||.|
1zvu_A_mol_pr    310 LSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE    359

gb_WP_0419182    401 DEPKQVLMARFNLSDEQAEAILNLRLRHLAKLEEHQLQAEKDKLEEERSN    450
                     ||||..||:||.|::.||||||.|:|||||||||.:::.|:.:||:||..
1zvu_A_mol_pr    360 DEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQ    409

gb_WP_0419182    451 LELILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKAISESEMTP    500
                     |:.||.|||::|.|:|||:|.||:.|...|.|.|.|||||||:||.:|.|
1zvu_A_mol_pr    410 LQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLP    459

gb_WP_0419182    501 AEPVTVILSEMGWVRCAKGHDIDPEGLSYKAGDKYLAHACGKSNQPVIFI    550
                     :||||::||:|||||.|||         :||..|      |||||||:|:
1zvu_A_mol_pr    460 SEPVTIVLSQMGWVRSAKG---------FKAAVK------GKSNQPVVFV    494

gb_WP_0419182    551 DSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIEQVIMEPEKQELLM    600
                     ||||||||:||::|||||   ||||||||||.|||::.::||.:.|:|||
1zvu_A_mol_pr    495 DSTGRSYAIDPITLPSAR---EPLTGKLTLPPGATVDHMLMESDDQKLLM    541

gb_WP_0419182    601 ASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPETLSESTSLLVSL    650
                     ||||||||:|.|.||:|||:||||||:|||||.|:.|..:.:::.:|:::
1zvu_A_mol_pr    542 ASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI    591

gb_WP_0419182    651 TSAGRMLIFPVRDLPALSKGKGNKIISIPAANAKARSELLVKLFLISEQA    700
                     |.|||||:|||.|||.||||||||||:||:|.|....:.|.:|:::..|:
1zvu_A_mol_pr    592 TQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQS    641

gb_WP_0419182    701 SLEFHSGKRKITLKPEDLQKFRAERGRKGSQLPRGLHSNVDIVVVEPEHN    750
                     :|..|.|||||.|:||:|||...||||:|: |.||| ..:|.|.::    
1zvu_A_mol_pr    642 TLTIHVGKRKIKLRPEELQKVTGERGRRGT-LMRGL-QRIDRVEID----    685

gb_WP_0419182    751 S    751
                      
1zvu_A_mol_pr    685 -    685


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