########################################
# Program: needle
# Rundate: Wed 30 May 2018 13:09:17
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_WP_014065640.1_ARO_3003924_Haemophilus_4tma_C/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_WP_014065640.1_ARO_3003924_Haemophilus_4tma_C/gb_WP_014065640.1_ARO_3003924_Haemophilus_parainfluenzae_gyrA_conferring_resistance_to_fluoroquinolones__Haemophilus_parainfluenzae.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_WP_014065640.1_ARO_3003924_Haemophilus_4tma_C/4tma_C.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_WP_014065640.1_ARO_3003924_Haemophilus_4tma_C/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_WP_014065640.1_ARO_3003924_Haemophilus_parainfluenzae_gyrA_conferring_resistance_to_fluoroquinolones__Haemophilus_parainfluenzae
# 2: 4tma_C_mol_protein_length_525__DNA_gyrase_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     340/882 (38.5%)
# Similarity:   405/882 (45.9%)
# Gaps:         408/882 (46.3%)
# Score: 1703.0
# 
#
#=======================================

gb_WP_0140656      1 MTDSIHSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVL     50
                                         ||||||||||||||||||||||||||||||
4tma_C_mol_pr      1 --------------------SYLDYAMSVIVGRALPDVRDGLKPVHRRVL     30

gb_WP_0140656     51 FSMDQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR    100
                     ::|:..|....|.|.|||||||||||||||||||||||||||||||||||
4tma_C_mol_pr     31 YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR     80

gb_WP_0140656    101 YMLVDGQGNFGSIDGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNY    150
                     ||||||||||||||||:.|||||||:|:.||...|:.||:||||:|..||
4tma_C_mol_pr     81 YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNY    130

gb_WP_0140656    151 DGELMIPDVLPTRIPALLANGSSGIAVGMATNIPPHNLNEVLDGCLAYID    200
                     ||...||||:||:||.||.|||||||||||||||||||.||::|||||||
4tma_C_mol_pr    131 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID    180

gb_WP_0140656    201 NENITIDELMQYIPGPDFPTAALINGRKGIEEAYRTGRGKVYVRARASVE    250
                     :|:|:|:.||::||||||||||:||||:||||||||||||||:||||.||
4tma_C_mol_pr    181 DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE    230

gb_WP_0140656    251 TTDK-GKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNIIDLSNKE    299
                     ...| |:|.|||.|:|||||||:|:||||||:|:|::||||.:.|.|:|:
4tma_C_mol_pr    231 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD    280

gb_WP_0140656    300 GIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQ    349
                     |:||.|::|||||||||||:||:.||:||:||||||||.||||::.|||.
4tma_C_mol_pr    281 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKD    330

gb_WP_0140656    350 IIEAFVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQ    399
                     ||.|||.||||||.||::|||||||:|.||||.||||.:|||.||::||.
4tma_C_mol_pr    331 IIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRH    380

gb_WP_0140656    400 SKERKEAAEKLISRPWKLNNEILGLLDAAARPAELAAEFGIKGSDYYLSP    449
                     :....||...|::          .:|:.|.                  :.
4tma_C_mol_pr    381 APTPAEAKTALVA----------AMLERAG------------------TE    402

gb_WP_0140656    450 EQVDAILELRLHRLTGLATEEVINEYKELLVKIAELLHIINSPERLMEVI    499
                     :|..|||:|||.:||||..|::::||||||.:|||||.|:.|.:||||||
4tma_C_mol_pr    403 QQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVI    452

gb_WP_0140656    500 REELEQVRAQFADERRTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQ    549
                     |||||.||.||.|:|||||||.|                           
4tma_C_mol_pr    453 REELELVREQFGDKRRTEITANS---------------------------    475

gb_WP_0140656    550 PLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSRGRLYWL    599
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_WP_0140656    600 KVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEEDKFVIMATAG    649
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_WP_0140656    650 GIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGR    699
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_WP_0140656    700 VVRFAESAVRAMGRLATGVRGIKLALTNDIADDESAVEIEEVSDDNAEET    749
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_WP_0140656    750 LDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISI    799
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_WP_0140656    800 KVSERNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRL    849
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_WP_0140656    850 IRTAEDEHVVSLERVCDVDDEDEGTEDVTSEE    881
                                                     
4tma_C_mol_pr    475 --------------------------------    475


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