########################################
# Program: needle
# Rundate: Wed 30 May 2018 16:45:59
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_WP_010891786.1_ARO_3003309_Ureaplasma_4juo_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_WP_010891786.1_ARO_3003309_Ureaplasma_4juo_A/gb_WP_010891786.1_ARO_3003309_Ureaplasma_urealyticum_parC_conferring_resistance_to_fluoroquinolone__Ureaplasma_parvum.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_WP_010891786.1_ARO_3003309_Ureaplasma_4juo_A/4juo_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_WP_010891786.1_ARO_3003309_Ureaplasma_4juo_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_WP_010891786.1_ARO_3003309_Ureaplasma_urealyticum_parC_conferring_resistance_to_fluoroquinolone__Ureaplasma_parvum
# 2: 4juo_A_mol_protein_length_496__DNA_topoisomerase_4_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 858
# Identity:     244/858 (28.4%)
# Similarity:   340/858 (39.6%)
# Gaps:         387/858 (45.1%)
# Score: 1211.5
# 
#
#=======================================

gb_WP_0108917      1 MSVNHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILY     50
                           .|.|..|::|:||.:.:|:|||||||||||||||||||||||||
4juo_A_mol_pr      1 ------NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILY     44

gb_WP_0108917     51 AMSELGIFYDKPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNL    100
                     :|::....:||.|:|||::||.::|.:|||||||||:|||||||:|||..
4juo_A_mol_pr     45 SMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNRE     94

gb_WP_0108917    101 CLLDMHGNKGSIDGDNAAAMRYTEARLSKIASVMLANLKKDVVKFSPNFD    150
                     .|::||||.||:|||..|||||||||||:||..:|.:::|..|.|:.|||
4juo_A_mol_pr     95 ILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD    144

gb_WP_0108917    151 DSEKEPSILPSLFPNLLINGATGIASGYATNIPPHNPNEVFDALIYRIDH    200
                     |:||||::||:.|||||:||:|||::||||:|||||..||.||.:|.|||
4juo_A_mol_pr    145 DTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDH    194

gb_WP_0108917    201 PDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFIIRACIDF-K    249
                     |...::||:|..|.||||||..|...:....|::||:|:.::|:..:. |
4juo_A_mol_pr    195 PTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEK    244

gb_WP_0108917    250 INDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKG    299
                     :...| .||:|:.||||.|||.::|:|:|:..|.:|||:.|||||||..|
4juo_A_mol_pr    245 LKGGK-EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDG    293

gb_WP_0108917    300 ISIIIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVHRTPTLVNLSTY    349
                     :.|.|:.|||.|.|.|.|||:|.|:|:|:||...:||.:.||..| :...
4juo_A_mol_pr    294 LRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-IVPI    342

gb_WP_0108917    350 LDAQINHSLDVINKVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRAS    399
                     |.:.|.|..:||.....:|..|...|:.||||||:.:.::||:|.:||||
4juo_A_mol_pr    343 LSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRAS    392

gb_WP_0108917    400 ESRQDAKNTLIQVFNFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDE    449
                     |::.|||..|...::||..|||||:.::|:.||        |:...||:|
4juo_A_mol_pr    393 ENKADAKENLKVSYDFTEEQAEAIVTLQLYRLT--------NDVVVLQEE    434

gb_WP_0108917    450 AKTLQERINSL-------QVRKNYLKQKMIEFKKTFGFERKTKLFDELVK    492
                     ...|:|:|..|       :...|.:|:::.|.||.| ..|.:.|.|    
4juo_A_mol_pr    435 EAELREKIAMLAAIIGDERTMYNLMKKELREVKKKF-TPRLSSLED----    479

gb_WP_0108917    493 VEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDILFY    542
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_WP_0108917    543 HNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEK    592
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_WP_0108917    593 VIAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDINKNSKQISIMKLN    642
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_WP_0108917    643 DNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMK    692
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_WP_0108917    693 LKPNDEVSAILITPNNGYNVQLFLERGSKCFNISELKLSKRAATPTNLYP    742
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_WP_0108917    743 ITKKVQNVLAAFLVAHENVFYLLDQQQKINPYYLSNPKPTKLDTKISIYE    792
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_WP_0108917    793 NDQMITDVVKDCFLSDEAISDFKKINMYANEFDNEMLKINKNHDDSQLEL    842
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_WP_0108917    843 IDEEEEKK    850
                             
4juo_A_mol_pr    479 --------    479


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