######################################## # Program: needle # Rundate: Wed 30 May 2018 14:59:39 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_WP_005768149.1_ARO_3003302_Bartonella_4i3h_A/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_WP_005768149.1_ARO_3003302_Bartonella_4i3h_A/gb_WP_005768149.1_ARO_3003302_Bartonella_bacilliformis_gyrB_conferring_resistance_to_aminocoumarin__Bartonella_bacilliformis_KC583.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_WP_005768149.1_ARO_3003302_Bartonella_4i3h_A/4i3h_A.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_WP_005768149.1_ARO_3003302_Bartonella_4i3h_A/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: gb_WP_005768149.1_ARO_3003302_Bartonella_bacilliformis_gyrB_conferring_resistance_to_aminocoumarin__Bartonella_bacilliformis_KC583 # 2: 4i3h_A_mol_protein_length_1144__Topoisomerase_IV_subunit_B,_DNA_topoisomerase_4_subunit_A_chimera # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1294 # Identity: 283/1294 (21.9%) # Similarity: 399/1294 (30.8%) # Gaps: 742/1294 (57.3%) # Score: 1249.5 # # #======================================= gb_WP_0057681 1 MSDETTSPTSGDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYE 50 |||||||||||.| ||:||||:|:| 4i3h_A_mol_pr 1 -------------------------AVRKRPGMYIGST-DGAGLHHLVWE 24 gb_WP_0057681 51 VVDNAIDEALAGYATLVNVTLHADGSCSVCDNGRGIPTDIHPTEHVSAAE 100 :||||:|||| :..::||::.|||.:|.|: ..| 4i3h_A_mol_pr 25 IVDNAVDEAL---SDRIDVTINKDGSLTVQDH---------------TVE 56 gb_WP_0057681 101 VIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVWLRLRIKRDGKIHE 150 ||.|.||||||| |||||.|||||||.||.:.|.|||.::: 4i3h_A_mol_pr 57 VIFTILHAGGKF----------LHGVGSSVVNALSSWLEVEITRDGAVYK 96 gb_WP_0057681 151 MSFTHGVADAPLKVVGQCGT----ESGTEISFLPSPETFTMVKFDFETLE 196 ..|.:| ..|:..:.:.|| ::||:::|:|....|:...|.:.|:. 4i3h_A_mol_pr 97 QRFENG--GKPVTTLKKIGTAPKSKTGTKVTFMPDATIFSTTDFKYNTIS 144 gb_WP_0057681 197 RRLRELAFLNSGVHILLVNQHHADVRSVELYYEGGLIEFIKYIDQSKKPL 246 .||.|.|||...|.:.|.::...: ::|.:||.|:.:|:.|:::.|: : 4i3h_A_mol_pr 145 ERLNESAFLLKNVTLSLTDKRTDE--AIEFHYENGVQDFVSYLNEDKE-I 191 gb_WP_0057681 247 IDAPIYITSEKDGISVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFR 296 :...:|...|.:|..|:|||.:||.:.:.:|.|.||:..:|||||..|.: 4i3h_A_mol_pr 192 LTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLK 241 gb_WP_0057681 297 SALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDP--KFSS 344 ||:|:.:|.||..:|:.|::: |.|.||||.|:||:.||:. :|.. 4i3h_A_mol_pr 242 SAITKVMNDYARKTGLLKEKE----GSDYREGLAAVLSILVPEEHLQFEG 287 gb_WP_0057681 345 QTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKILISKVVEAAAAREA 394 ||||||.|...||:|:.:|.:.|:.:|.|:...|..||.|.::|..|||| 4i3h_A_mol_pr 288 QTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDAREA 337 gb_WP_0057681 395 ARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDSAGGSAKS 444 ||||| |||...|.::|.|:|:::|||||||||||. 4i3h_A_mol_pr 338 ARKAR---------------GKLTPAQSKNPAKNELYLVEGDSAGGSAKQ 372 gb_WP_0057681 445 GRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTLITALGTSIGKDEFS 494 ||.|:.|||||||||::|..:|:...:|.:|.|.|:|..:|..:|.| || 4i3h_A_mol_pr 373 GRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGAD-FS 421 gb_WP_0057681 495 PDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPL 544 .:...|.|||||||||.|||||:|||||||:|.|..|:|.||:|||.||| 4i3h_A_mol_pr 422 IEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 471 gb_WP_0057681 545 YKVSRGKSSQYIKNEAAFEDFLIDSGLEETTLELSSGEVCAGIDLRQFVQ 594 ||:|:| 4i3h_A_mol_pr 472 YKMSKG-------------------------------------------- 477 gb_WP_0057681 595 DARLLRQLLNGLHTRYDRNIVEQAAIAGAFNFEAFATPETAQKIADTIAK 644 |:| 4i3h_A_mol_pr 478 ---------------------------------AYA-------------- 480 gb_WP_0057681 645 RLDLIADDMERGWSGQYTSDGSLCFERVLRGVKDVITLDAGFINSADARQ 694 |.|: 4i3h_A_mol_pr 481 ------------WDGE---------------------------------- 484 gb_WP_0057681 695 IGHIAKNLKDIYRDPPLLRRKDKSERIFGPTSLLESIFINGKKGITLQRY 744 ||. :.|||| 4i3h_A_mol_pr 485 ---------------------------------LEE--------LRLQRY 493 gb_WP_0057681 745 KGLGEMNADQLWETTLDPDARSLLQVKINDATDADSLFSQLMGDEVEPRR 794 |||||||||||||||::|:.|:|::|.|.|...|:...:.||||:||||| 4i3h_A_mol_pr 494 KGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRR 543 gb_WP_0057681 795 IFIQKNAL----NVANLDI------------------------------- 809 .:|:.|.. |:.|:.: 4i3h_A_mol_pr 544 KWIEDNVKFTLENIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPV 593 gb_WP_0057681 809 -------------------------------------------------- 809 4i3h_A_mol_pr 594 QRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQ 643 gb_WP_0057681 809 -------------------------------------------------- 809 4i3h_A_mol_pr 644 NWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVP 693 gb_WP_0057681 809 -------------------------------------------------- 809 4i3h_A_mol_pr 694 FAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAA 743 gb_WP_0057681 809 -------------------------------------------------- 809 4i3h_A_mol_pr 744 VYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRS 793 gb_WP_0057681 809 -------------------------------------------------- 809 4i3h_A_mol_pr 794 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDE 843 gb_WP_0057681 809 -------------------------------------------------- 809 4i3h_A_mol_pr 844 SDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV 893 gb_WP_0057681 809 -------------------------------------------------- 809 4i3h_A_mol_pr 894 GIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIA 943 gb_WP_0057681 809 -------------------------------------------------- 809 4i3h_A_mol_pr 944 LIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEA 993 gb_WP_0057681 809 -------------------------------------------- 809 4i3h_A_mol_pr 994 ELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLED 1037 #--------------------------------------- #---------------------------------------