########################################
# Program: needle
# Rundate: Wed 30 May 2018 14:14:29
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_WP_004025678.1_ARO_3003305_Ureaplasma_4i3h_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_WP_004025678.1_ARO_3003305_Ureaplasma_4i3h_A/gb_WP_004025678.1_ARO_3003305_Ureaplasma_urealyticum__gyrB_conferring_resistance_to_fluoroquinolone__Ureaplasma_urealyticum.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_WP_004025678.1_ARO_3003305_Ureaplasma_4i3h_A/4i3h_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_WP_004025678.1_ARO_3003305_Ureaplasma_4i3h_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_WP_004025678.1_ARO_3003305_Ureaplasma_urealyticum__gyrB_conferring_resistance_to_fluoroquinolone__Ureaplasma_urealyticum
# 2: 4i3h_A_mol_protein_length_1144__Topoisomerase_IV_subunit_B,_DNA_topoisomerase_4_subunit_A_chimera
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1131
# Identity:     279/1131 (24.7%)
# Similarity:   384/1131 (34.0%)
# Gaps:         575/1131 (50.8%)
# Score: 1296.5
# 
#
#=======================================

gb_WP_0040256      1 MNDSNKENKYTAESIKVLEGLEAVRKRPGMYIGSTQSEGLHHMIWEIVDN     50
                                           |||||||||||||...||||::||||||
4i3h_A_mol_pr      1 ----------------------AVRKRPGMYIGSTDGAGLHHLVWEIVDN     28

gb_WP_0040256     51 SIDEAMGGFATVVKVIIKKDGVIRVEDDGRGIPVGIHEKTGLSGVETVLT    100
                     ::|||:   :..:.|.|.|||.:.|:|         |.      ||.:.|
4i3h_A_mol_pr     29 AVDEAL---SDRIDVTINKDGSLTVQD---------HT------VEVIFT     60

gb_WP_0040256    101 VLHAGGKFDNDSYKVSGGLHGVGASVVNALSKNFKVWVNKNYVQHYVEFI    150
                     :|||||||          |||||:|||||||...:|.:.::...:...|.
4i3h_A_mol_pr     61 ILHAGGKF----------LHGVGSSVVNALSSWLEVEITRDGAVYKQRFE    100

gb_WP_0040256    151 NGGHAIEPLKIINDKDIKEKGTTIEFIPDFEIMEENEWDELKIMARLKQL    200
                     |||..:..||.|......:.||.:.|:||..|....::....|..||.:.
4i3h_A_mol_pr    101 NGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFSTTDFKYNTISERLNES    150

gb_WP_0040256    201 AYLNKGVNIEFESEMTNRKEKWHYEGGLKEYIADLNAEKEPLFDAIVYGE    250
                     |:|.|.|.:....:.|:...::|||.|::::::.||.:||.|...:.:..
4i3h_A_mol_pr    151 AFLLKNVTLSLTDKRTDEAIEFHYENGVQDFVSYLNEDKEILTPVLYFEG    200

gb_WP_0040256    251 EEKEVKVPGHNDQTYNIKCEVAFQYNNSYNNSTHSFCNNINTTEGGTHEE    300
                     |:...:|            |||.|||:.::::..||.||:.|.:|||||.
4i3h_A_mol_pr    201 EDNGFQV------------EVALQYNDGFSDNILSFVNNVRTKDGGTHET    238

gb_WP_0040256    301 GFKLAITRLLNKYAIDKKYLKDTDDKITKEDVSEGLTAIISIKHPNP--Q    348
                     |.|.|||:::|.||.....||:.:.    .|..|||.|::||..|..  |
4i3h_A_mol_pr    239 GLKSAITKVMNDYARKTGLLKEKEG----SDYREGLAAVLSILVPEEHLQ    284

gb_WP_0040256    349 YEGQTKKKLGNSEVRPYVNEITSIIFEKFLNENPEESKKIVAKVMQAAEA    398
                     :|||||.|||:...||.|:.|.:.....||.||.|.:..::.|.::|.:|
4i3h_A_mol_pr    285 FEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDA    334

gb_WP_0040256    399 RRRSHEAREATRRKSPFESNSLPGKLADCSNRDSSVTEIYIVEGDSAGGS    448
                     |..:.:||               |||....:::.:..|:|:|||||||||
4i3h_A_mol_pr    335 REAARKAR---------------GKLTPAQSKNPAKNELYLVEGDSAGGS    369

gb_WP_0040256    449 AKTGREREFQAILPLRGKIINVEKAKIDKIFANEEIQNMITAFGAGIGPE    498
                     ||.||:|:||||||||||:||..|||:..|..||||..||...|||:|.:
4i3h_A_mol_pr    370 AKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGAD    419

gb_WP_0040256    499 FNIEKLRYSKIIIMTDADVDGSHIRILLLTFFYRYMLPLIQNGNVYIAQP    548
                     |:||...|.|||||||||.||:||:.||||||||||.||::.|:||||.|
4i3h_A_mol_pr    420 FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALP    469

gb_WP_0040256    549 PLYKVSYGKTIKYAYSDQELEKIKSTLLNTKYNIQRYKGLGEMNPDQLWE    598
                     ||||:|.|   .||: |.|||:::         :||||||||||.|||||
4i3h_A_mol_pr    470 PLYKMSKG---AYAW-DGELEELR---------LQRYKGLGEMNADQLWE    506

gb_WP_0040256    599 TTMDPKNRLLLKVNIEDAAIADKTFSLLMGDDVTPRKEFIEKNAKY-VKN    647
                     |||:|:.|.|::|.|||.|.|::..::||||.|.||:::||.|.|: ::|
4i3h_A_mol_pr    507 TTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEN    556

gb_WP_0040256    648 IDA-----------------------------------------------    650
                     |..                                               
4i3h_A_mol_pr    557 IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSN    606

gb_WP_0040256    650 --------------------------------------------------    650
                                                                       
4i3h_A_mol_pr    607 TFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHG    656

gb_WP_0040256    650 --------------------------------------------------    650
                                                                       
4i3h_A_mol_pr    657 NNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPT    706

gb_WP_0040256    650 --------------------------------------------------    650
                                                                       
4i3h_A_mol_pr    707 VLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDK    756

gb_WP_0040256    650 --------------------------------------------------    650
                                                                       
4i3h_A_mol_pr    757 LMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ    806

gb_WP_0040256    650 --------------------------------------------------    650
                                                                       
4i3h_A_mol_pr    807 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK    856

gb_WP_0040256    650 --------------------------------------------------    650
                                                                       
4i3h_A_mol_pr    857 KDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHR    906

gb_WP_0040256    650 --------------------------------------------------    650
                                                                       
4i3h_A_mol_pr    907 REVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKE    956

gb_WP_0040256    650 --------------------------------------------------    650
                                                                       
4i3h_A_mol_pr    957 NLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAII   1006

gb_WP_0040256    650 -------------------------------    650
                                                    
4i3h_A_mol_pr   1007 GDERTMYNLMKKELREVKKKFATPRLSSLED   1037


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