########################################
# Program: needle
# Rundate: Wed 30 May 2018 12:16:07
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_708834.1_ARO_3003941_Shigella_1zvu_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_708834.1_ARO_3003941_Shigella_1zvu_A/gb_NP_708834.1_ARO_3003941_Shigella_flexneri_parC_conferring_resistance_to_fluoroquinolones__Shigella_flexneri_2a_str._301.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_708834.1_ARO_3003941_Shigella_1zvu_A/1zvu_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_708834.1_ARO_3003941_Shigella_1zvu_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_708834.1_ARO_3003941_Shigella_flexneri_parC_conferring_resistance_to_fluoroquinolones__Shigella_flexneri_2a_str._301
# 2: 1zvu_A_mol_protein_length_716__Topoisomerase_IV_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 752
# Identity:     685/752 (91.1%)
# Similarity:   685/752 (91.1%)
# Gaps:          67/752 ( 8.9%)
# Score: 3438.5
# 
#
#=======================================

gb_NP_708834.      1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMS     50
                                                |||||||||||||||||||||||
1zvu_A_mol_pr      1 ---------------------------DRALPFIGDGLKPVQRRIVYAMS     23

gb_NP_708834.     51 ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLV    100
                     ||||          ||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr     24 ELGL----------RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLV     63

gb_NP_708834.    101 DGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr     64 DGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGT    113

gb_NP_708834.    151 LQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPK    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    114 LQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPK    163

gb_NP_708834.    201 TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    164 TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG    213

gb_NP_708834.    251 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    214 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV    263

gb_NP_708834.    301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    264 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW    313

gb_NP_708834.    351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    314 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK    363

gb_NP_708834.    401 PALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    364 PALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI    413

gb_NP_708834.    451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPV    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    414 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPV    463

gb_NP_708834.    501 TIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTG    550
                     |||||||||||||||               ||||||||||||||||||||
1zvu_A_mol_pr    464 TIVLSQMGWVRSAKG---------------FKAAVKGKSNQPVVFVDSTG    498

gb_NP_708834.    551 RSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDA    600
                     ||||||||||||||   |||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    499 RSYAIDPITLPSAR---EPLTGKLTLPPGATVDHMLMESDDQKLLMASDA    545

gb_NP_708834.    601 GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    546 GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG    595

gb_NP_708834.    651 RMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI    700
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    596 RMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI    645

gb_NP_708834.    701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDS    750
                     ||||||||||||||||||||||||||||||||||||||||          
1zvu_A_mol_pr    646 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID----------    685

gb_NP_708834.    751 EE    752
                       
1zvu_A_mol_pr    685 --    685


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