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# Program: needle
# Rundate: Wed 30 May 2018 14:31:48
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_463130.1_ARO_3003383_Salmonella_1bl0_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_463130.1_ARO_3003383_Salmonella_1bl0_A/gb_NP_463130.1_ARO_3003383_Salmonella_serovars_soxS_with_mutation_conferring_antibiotic_resistance__Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_463130.1_ARO_3003383_Salmonella_1bl0_A/1bl0_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_463130.1_ARO_3003383_Salmonella_1bl0_A/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_463130.1_ARO_3003383_Salmonella_serovars_soxS_with_mutation_conferring_antibiotic_resistance__Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2
# 2: 1bl0_A_mol_protein_length_129__PROTEIN_(MULTIPLE_ANTIBIOTIC_RESISTANCE_PROTEIN)
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 118
# Identity:      43/118 (36.4%)
# Similarity:    71/118 (60.2%)
# Gaps:          13/118 (11.0%)
# Score: 226.0
# 
#
#=======================================

gb_NP_463130.      1 MSHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTL     50
                       ....|.::::||:::::.||:::.|:::||||||:|||||:..|..:|
1bl0_A_mol_pr      1 --DAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSL     48

gb_NP_463130.     51 GEYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTP    100
                     |:|||.|::...|.:|:.:..||..:|...|:.||||.:|.|:..||..|
1bl0_A_mol_pr     49 GQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPP     98

gb_NP_463130.    101 SDYR-----------HRL    107
                     ..||           |.|
1bl0_A_mol_pr     99 HKYRMTNMQGESRFLHPL    116


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