########################################
# Program: needle
# Rundate: Wed 30 May 2018 13:35:23
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_462735.1_ARO_3003307_Salmonella_4i3h_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_462735.1_ARO_3003307_Salmonella_4i3h_A/gb_NP_462735.1_ARO_3003307_Salmonella_serovars_gyrB_conferring_resistance_to_fluoroquinolone__Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_462735.1_ARO_3003307_Salmonella_4i3h_A/4i3h_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_462735.1_ARO_3003307_Salmonella_4i3h_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_462735.1_ARO_3003307_Salmonella_serovars_gyrB_conferring_resistance_to_fluoroquinolone__Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2
# 2: 4i3h_A_mol_protein_length_1144__Topoisomerase_IV_subunit_B,_DNA_topoisomerase_4_subunit_A_chimera
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1288
# Identity:     304/1288 (23.6%)
# Similarity:   395/1288 (30.7%)
# Gaps:         735/1288 (57.1%)
# Score: 1283.5
# 
#
#=======================================

gb_NP_462735.      1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDE     50
                                      |||||||||||.| ||.||||:|:|:||||:||
4i3h_A_mol_pr      1 -----------------AVRKRPGMYIGST-DGAGLHHLVWEIVDNAVDE     32

gb_NP_462735.     51 ALAGHCKDIVVTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHA    100
                     ||:..   |.|||:.|.|::|.|               ...|||.|:|||
4i3h_A_mol_pr     33 ALSDR---IDVTINKDGSLTVQD---------------HTVEVIFTILHA     64

gb_NP_462735.    101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEH-GV    149
                     ||||          |||||.|||||||..||:.|.|||.:::|.:|: |.
4i3h_A_mol_pr     65 GGKF----------LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGK    104

gb_NP_462735.    150 PQAPLAVTGDT--DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFL    197
                     |...|...|..  .||||.|.|.|. .|..:.|:|:|..:::||.|.:||
4i3h_A_mol_pr    105 PVTTLKKIGTAPKSKTGTKVTFMPD-ATIFSTTDFKYNTISERLNESAFL    153

gb_NP_462735.    198 NSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEK    247
                     ...|::.|.|||..:...||||.|::.||.|||::|..:.| :.||..|.
4i3h_A_mol_pr    154 LKNVTLSLTDKRTDEAIEFHYENGVQDFVSYLNEDKEILTP-VLYFEGED    202

gb_NP_462735.    248 DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM    297
                     :|..||||||:||||.:||..|.||:..:|||||..|.::|:|:.:|.|.
4i3h_A_mol_pr    203 NGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYA    252

gb_NP_462735.    298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEV    345
                     .|.|..|:.:    |.|.||||.||:|:.||:.  :|..||||||.|...
4i3h_A_mol_pr    253 RKTGLLKEKE----GSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLA    298

gb_NP_462735.    346 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRK    395
                     :..|:..:.:.|:.:|:||...|..::.|.|.|..||||||:||      
4i3h_A_mol_pr    299 RPVVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKAR------    342

gb_NP_462735.    396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILP    445
                              |||...|.::||.:||||||||||||||||||:||.|||||
4i3h_A_mol_pr    343 ---------GKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILP    383

gb_NP_462735.    446 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII    495
                     |:||::|..||:...:|.::|:.|:|..:|.|:|.| ::.:...|..|||
4i3h_A_mol_pr    384 LRGKVINTAKAKMADILKNEEINTMIYTIGAGVGAD-FSIEDANYDKIII    432

gb_NP_462735.    496 MTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQY    545
                     |||||.||:||:|||||||||.|..:||.||||||.|||||:.||     
4i3h_A_mol_pr    433 MTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG-----    477

gb_NP_462735.    546 IKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIG    595
                                 :.|.||                                
4i3h_A_mol_pr    478 ------------AYAWDG--------------------------------    483

gb_NP_462735.    596 RMERRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGS    645
                                                             ||.|      
4i3h_A_mol_pr    484 ----------------------------------------ELEE------    487

gb_NP_462735.    646 QWKFDVHTNTEQNLFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGE    695
                                                                       
4i3h_A_mol_pr    487 --------------------------------------------------    487

gb_NP_462735.    696 KLRGLIEEDAFIERGERRQPVTSFEQALEWLVKESRRGLAIQRYKGLGEM    745
                                                           |.:|||||||||
4i3h_A_mol_pr    488 --------------------------------------LRLQRYKGLGEM    499

gb_NP_462735.    746 NPDQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN    795
                     |.||||||||:||:|.::|||::|...|::....||||.|||||.:||:|
4i3h_A_mol_pr    500 NADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN    549

gb_NP_462735.    796 A-LKAANI------DI----------------------------------    804
                     . ....||      ||                                  
4i3h_A_mol_pr    550 VKFTLENIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILY    599

gb_NP_462735.    804 --------------------------------------------------    804
                                                                       
4i3h_A_mol_pr    600 SMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNRE    649

gb_NP_462735.    804 --------------------------------------------------    804
                                                                       
4i3h_A_mol_pr    650 ILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD    699

gb_NP_462735.    804 --------------------------------------------------    804
                                                                       
4i3h_A_mol_pr    700 DTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDH    749

gb_NP_462735.    804 --------------------------------------------------    804
                                                                       
4i3h_A_mol_pr    750 PTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEK    799

gb_NP_462735.    804 --------------------------------------------------    804
                                                                       
4i3h_A_mol_pr    800 LKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGL    849

gb_NP_462735.    804 --------------------------------------------------    804
                                                                       
4i3h_A_mol_pr    850 RIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPIL    899

gb_NP_462735.    804 --------------------------------------------------    804
                                                                       
4i3h_A_mol_pr    900 SSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASE    949

gb_NP_462735.    804 --------------------------------------------------    804
                                                                       
4i3h_A_mol_pr    950 NKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKI    999

gb_NP_462735.    804 --------------------------------------    804
                                                           
4i3h_A_mol_pr   1000 AMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLED   1037


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