######################################## # Program: needle # Rundate: Wed 30 May 2018 13:33:13 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_462096.1_ARO_3003317_Salmonella_4i3h_A/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_462096.1_ARO_3003317_Salmonella_4i3h_A/gb_NP_462096.1_ARO_3003317_Salmonella_serovars_parE_conferring_resistance_to_fluoroquinolones__Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_462096.1_ARO_3003317_Salmonella_4i3h_A/4i3h_A.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_462096.1_ARO_3003317_Salmonella_4i3h_A/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: gb_NP_462096.1_ARO_3003317_Salmonella_serovars_parE_conferring_resistance_to_fluoroquinolones__Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 # 2: 4i3h_A_mol_protein_length_1144__Topoisomerase_IV_subunit_B,_DNA_topoisomerase_4_subunit_A_chimera # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1123 # Identity: 235/1123 (20.9%) # Similarity: 331/1123 (29.5%) # Gaps: 579/1123 (51.6%) # Score: 915.0 # # #======================================= gb_NP_462096. 1 MTQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEA 47 .||:||||| ||....:||..|::||:|||| 4i3h_A_mol_pr 1 -----------------AVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEA 33 gb_NP_462096. 48 LAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 | :.|:||.::.|.||.|.|. .||:|...|||| 4i3h_A_mol_pr 34 L---SDRIDVTINKDGSLTVQDH---------------TVEVIFTILHAG 65 gb_NP_462096. 98 GKFSNKNYQFSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEK- 146 ||| |||||.|||||||..:||.:.|||.||...||||.| 4i3h_A_mol_pr 66 GKF----------LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKP 105 gb_NP_462096. 147 VQDLQVVGTCGKRNTGTSVHFWPDESFFDSPRFSVSRLMHVLKAKAVLCP 196 |..|:.:||..|..|||.|.|.||.:.|.:..|..:.:...|...|.|.. 4i3h_A_mol_pr 106 VTTLKKIGTAPKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLK 155 gb_NP_462096. 197 GVEITFKDEVNNSEQRWCYQDGLND---YLGEAVNGLPTLPEKPFIGNFN 243 .|.::..|:..:....:.|::|:.| ||.|....| .|...|.|..| 4i3h_A_mol_pr 156 NVTLSLTDKRTDEAIEFHYENGVQDFVSYLNEDKEIL--TPVLYFEGEDN 203 gb_NP_462096. 244 G-ETEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 | :.|.. |...:|......|:||.:.|..||||..||:..:...|. 4i3h_A_mol_pr 204 GFQVEVA----LQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMN 249 gb_NP_462096. 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSR 340 ::.....:|. :....|..:..|.|||:.:.:. ||.||||::|.|. 4i3h_A_mol_pr 250 DYARKTGLLK---EKEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSP 296 gb_NP_462096. 341 QCAAFVSGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKK 390 .....|.|:|.|..:.:|.:|.:.|..|...|| :.|.|::..|| 4i3h_A_mol_pr 297 LARPVVDGIVADKLTFFLMENGELASNLIRKAI-----KARDAREAARK- 340 gb_NP_462096. 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPL 440 ..|||....:::..:.||:|||||||||||||.|||::|||:|| 4i3h_A_mol_pr 341 ------ARGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPL 384 gb_NP_462096. 441 KGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD-DLSQLRYGKICILA 489 :||::||.:....::|.::|::.:...||....:| .:....|.||.|:. 4i3h_A_mol_pr 385 RGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMT 434 gb_NP_462096. 490 DADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRIDLGKEVYYAL 539 |||:||.||.|||...|.|:.|.||:.||||:||||||::..|. ||. 4i3h_A_mol_pr 435 DADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGA---YAW 481 gb_NP_462096. 540 TEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQL 589 . |.||:|: :||:|||||||..||.|||::|.||.|::: 4i3h_A_mol_pr 482 D-----GELEELR-------LQRYKGLGEMNADQLWETTMNPETRTLIRV 519 gb_NP_462096. 590 TISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQE--KGDLADLDV----- 630 ||.| ..::|.|.:|. .:.|.||.|::: |..|.::.. 4i3h_A_mol_pr 520 TIEDLARAERRVNVLMG-----DKVEPRRKWIEDNVKFTLENIQNMSLED 564 gb_NP_462096. 630 -------------------------------------------------- 630 4i3h_A_mol_pr 565 IMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 614 gb_NP_462096. 630 -------------------------------------------------- 630 4i3h_A_mol_pr 615 SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGD 664 gb_NP_462096. 630 -------------------------------------------------- 630 4i3h_A_mol_pr 665 PPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPN 714 gb_NP_462096. 630 -------------------------------------------------- 630 4i3h_A_mol_pr 715 LLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGP 764 gb_NP_462096. 630 -------------------------------------------------- 630 4i3h_A_mol_pr 765 DFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPY 814 gb_NP_462096. 630 -------------------------------------------------- 630 4i3h_A_mol_pr 815 EINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 864 gb_NP_462096. 630 -------------------------------------------------- 630 4i3h_A_mol_pr 865 LNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 914 gb_NP_462096. 630 -------------------------------------------------- 630 4i3h_A_mol_pr 915 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDF 964 gb_NP_462096. 630 -------------------------------------------------- 630 4i3h_A_mol_pr 965 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYN 1014 gb_NP_462096. 630 ----------------------- 630 4i3h_A_mol_pr 1015 LMKKELREVKKKFATPRLSSLED 1037 #--------------------------------------- #---------------------------------------