########################################
# Program: needle
# Rundate: Wed 30 May 2018 11:34:00
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_462089.1_ARO_3003939_Salmonella_1zvu_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_462089.1_ARO_3003939_Salmonella_1zvu_A/gb_NP_462089.1_ARO_3003939_Salmonella_enterica_parC_conferring_resistance_to_fluoroquinolones__Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_462089.1_ARO_3003939_Salmonella_1zvu_A/1zvu_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_462089.1_ARO_3003939_Salmonella_1zvu_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_462089.1_ARO_3003939_Salmonella_enterica_parC_conferring_resistance_to_fluoroquinolones__Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2
# 2: 1zvu_A_mol_protein_length_716__Topoisomerase_IV_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 752
# Identity:     652/752 (86.7%)
# Similarity:   670/752 (89.1%)
# Gaps:          67/752 ( 8.9%)
# Score: 3310.5
# 
#
#=======================================

gb_NP_462089.      1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMS     50
                                                |||||||||||||||||||||||
1zvu_A_mol_pr      1 ---------------------------DRALPFIGDGLKPVQRRIVYAMS     23

gb_NP_462089.     51 ELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLV    100
                     ||||          ||||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr     24 ELGL----------RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLV     63

gb_NP_462089.    101 DGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTADWVPNFDGT    150
                     ||||||||||||||||||||||||||||:|||||||||||||||||||||
1zvu_A_mol_pr     64 DGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGT    113

gb_NP_462089.    151 MQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPK    200
                     :||||||||||||||||||||||||||||||||||||||:|||.||:|||
1zvu_A_mol_pr    114 LQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPK    163

gb_NP_462089.    201 TTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDG    250
                     |||||||||||||||||||||||.|||||||||||||||||||||.||||
1zvu_A_mol_pr    164 TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG    213

gb_NP_462089.    251 AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV    300
                     ||||||||||||||:|||||||||||||||||||||||||||||||||||
1zvu_A_mol_pr    214 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV    263

gb_NP_462089.    301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW    350
                     ||||||||:||||||||||||||||||||||||||||||||||||||:||
1zvu_A_mol_pr    264 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW    313

gb_NP_462089.    351 LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPK    400
                     |.||||||||||||||||||||||||||||||||||||||||||:|||||
1zvu_A_mol_pr    314 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK    363

gb_NP_462089.    401 PALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI    450
                     ||||||||::|||||||||||||||||||||||||||.||||||||||||
1zvu_A_mol_pr    364 PALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI    413

gb_NP_462089.    451 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPV    500
                     ||||||||.||||||||||.||||||||||:|||||||||||||||||||
1zvu_A_mol_pr    414 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPV    463

gb_NP_462089.    501 TIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTG    550
                     |||||||||||||||               |||||||||||||||:|:||
1zvu_A_mol_pr    464 TIVLSQMGWVRSAKG---------------FKAAVKGKSNQPVVFVDSTG    498

gb_NP_462089.    551 RSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDA    600
                     ||||||||||||||   |||||||||||||||:|||||.|||||||||||
1zvu_A_mol_pr    499 RSYAIDPITLPSAR---EPLTGKLTLPPGATVDHMLMESDDQKLLMASDA    545

gb_NP_462089.    601 GYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAG    650
                     |||||||||||||||||||.|||||||||||||:||||..||||||||||
1zvu_A_mol_pr    546 GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG    595

gb_NP_462089.    651 RMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI    700
                     |||||||..|||||||||||||||||||||:|:||||.||||||||||||
1zvu_A_mol_pr    596 RMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI    645

gb_NP_462089.    701 HVGKRKIKLRPEELQKVVGERGRRGTLMRGLQRIDRIEIDSPHRVSHGDS    750
                     |||||||||||||||||.||||||||||||||||||:|||          
1zvu_A_mol_pr    646 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID----------    685

gb_NP_462089.    751 EE    752
                       
1zvu_A_mol_pr    685 --    685


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