########################################
# Program: needle
# Rundate: Wed 30 May 2018 13:03:35
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_NP_461214.1_ARO_3004334_Salmonella_4tma_C/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_NP_461214.1_ARO_3004334_Salmonella_4tma_C/gb_NP_461214.1_ARO_3004334_Salmonella_enterica_gyrA_with_mutation_conferring_resistance_to_triclosan__Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_NP_461214.1_ARO_3004334_Salmonella_4tma_C/4tma_C.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_NP_461214.1_ARO_3004334_Salmonella_4tma_C/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_461214.1_ARO_3004334_Salmonella_enterica_gyrA_with_mutation_conferring_resistance_to_triclosan__Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2
# 2: 4tma_C_mol_protein_length_525__DNA_gyrase_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 878
# Identity:     462/878 (52.6%)
# Similarity:   471/878 (53.6%)
# Gaps:         403/878 (45.9%)
# Score: 2305.5
# 
#
#=======================================

gb_NP_461214.      1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY     50
                                        |||||||||||||||||||||||||||||||
4tma_C_mol_pr      1 -------------------SYLDYAMSVIVGRALPDVRDGLKPVHRRVLY     31

gb_NP_461214.     51 AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
4tma_C_mol_pr     32 AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY     81

gb_NP_461214.    101 MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
4tma_C_mol_pr     82 MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD    131

gb_NP_461214.    151 GTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDN    200
                     |||||||||||||||||||||||||||||||||||||||||||||||||:
4tma_C_mol_pr    132 GTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDD    181

gb_NP_461214.    201 EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEA    250
                     |||||||||||||||||||||||||||||||||||||||||||||||||.
4tma_C_mol_pr    182 EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV    231

gb_NP_461214.    251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDG    300
                     ||||||||||||||||||||||||||||||||:|||||||||||||||||
4tma_C_mol_pr    232 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG    281

gb_NP_461214.    301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
4tma_C_mol_pr    282 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI    331

gb_NP_461214.    351 ISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRA    400
                     |:||||||||||||||||||||||||||||||||:|||||||||||||.|
4tma_C_mol_pr    332 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHA    381

gb_NP_461214.    401 PTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYL    450
                     |||||||.||         |||||||||                      
4tma_C_mol_pr    382 PTPAEAKTAL---------VAAMLERAG----------------------    400

gb_NP_461214.    451 TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLME    500
                     ||||||||||||||||||||||||||||||||:||||||.||||||||||
4tma_C_mol_pr    401 TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLME    450

gb_NP_461214.    501 VIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVK    550
                     |||||:||:|:||||:|||||||||                         
4tma_C_mol_pr    451 VIREELELVREQFGDKRRTEITANS-------------------------    475

gb_NP_461214.    551 YQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY    600
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_461214.    601 WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMAT    650
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_461214.    651 ASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAA    700
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_461214.    701 GKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQN    750
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_461214.    751 GYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITD    800
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_461214.    801 AGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDA    850
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_461214.    851 IDGSVAEGDEDIAPEAESDDDVADDADE    878
                                                 
4tma_C_mol_pr    475 ----------------------------    475


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