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# Program: needle
# Rundate: Wed 30 May 2018 12:35:21
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_458564.1_ARO_3003382_Salmonella_2zhg_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_458564.1_ARO_3003382_Salmonella_2zhg_A/gb_NP_458564.1_ARO_3003382_Salmonella_enterica_soxR_with_mutation_conferring_antibiotic_resistance__Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_458564.1_ARO_3003382_Salmonella_2zhg_A/2zhg_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_458564.1_ARO_3003382_Salmonella_2zhg_A/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_458564.1_ARO_3003382_Salmonella_enterica_soxR_with_mutation_conferring_antibiotic_resistance__Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18
# 2: 2zhg_A_mol_protein_length_154__Redox-sensitive_transcriptional_activator_soxR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 152
# Identity:     119/152 (78.3%)
# Similarity:   121/152 (79.6%)
# Gaps:          31/152 (20.4%)
# Score: 606.0
# 
#
#=======================================

gb_NP_458564.      1 MEKKSPRLKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYK     50
                              |||||||||||||||||||||||||||||||||||||||||
2zhg_A_mol_pr      1 ---------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYK     41

gb_NP_458564.     51 RDVLRYVAIIKIAQRIGIPLATIGDAFGILPEGHTLSAKEWKQLSSQWRE    100
                     ||||||||||||||||||||||||:|||:     ||||||||||||||||
2zhg_A_mol_pr     42 RDVLRYVAIIKIAQRIGIPLATIGEAFGV-----TLSAKEWKQLSSQWRE     86

gb_NP_458564.    101 ELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEHGTGARLLE    150
                     |||||||||||||||||||||||||||||||||||               
2zhg_A_mol_pr     87 ELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNP---------------    121

gb_NP_458564.    151 DD    152
                       
2zhg_A_mol_pr    121 --    121


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