########################################
# Program: needle
# Rundate: Wed 30 May 2018 15:02:38
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_418486.1_ARO_3003511_Escherichia_1d5y_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_418486.1_ARO_3003511_Escherichia_1d5y_B/gb_NP_418486.1_ARO_3003511_Escherichia_coli_soxS_with_mutation_conferring_antibiotic_resistance__Escherichia_coli_str._K-12_substr._MG1655.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_418486.1_ARO_3003511_Escherichia_1d5y_B/1d5y_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_418486.1_ARO_3003511_Escherichia_1d5y_B/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_418486.1_ARO_3003511_Escherichia_coli_soxS_with_mutation_conferring_antibiotic_resistance__Escherichia_coli_str._K-12_substr._MG1655
# 2: 1d5y_B_mol_protein_length_292__ROB_TRANSCRIPTION_FACTOR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 290
# Identity:      57/290 (19.7%)
# Similarity:    76/290 (26.2%)
# Gaps:         185/290 (63.8%)
# Score: 297.0
# 
#
#=======================================

gb_NP_418486.      1 MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTL     50
                       ...||:||:.|::.|:||||::|.||.|:|||||:|||||:.||...:
1d5y_B_mol_pr      1 --QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAI     48

gb_NP_418486.     51 GDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTP    100
                     |.|||.|||..:||.||.|.|||.|||:...:.|||||:|.|::||.:||
1d5y_B_mol_pr     49 GAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTP     98

gb_NP_418486.    101 SDYRHRL-------------------------------------------    107
                     :.||...                                           
1d5y_B_mol_pr     99 ALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLE    148

gb_NP_418486.    107 --------------------------------------------------    107
                                                                       
1d5y_B_mol_pr    149 QISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTT    198

gb_NP_418486.    107 --------------------------------------------------    107
                                                                       
1d5y_B_mol_pr    199 ALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPM    248

gb_NP_418486.    107 ----------------------------------------    107
                                                             
1d5y_B_mol_pr    249 LNLTRRKGQDIERYYPAEDDRPINLRCELLIPIRRKLAAA    288


#---------------------------------------
#---------------------------------------