########################################
# Program: needle
# Rundate: Wed 30 May 2018 11:22:00
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_273462.1_ARO_3003937_Neisseria_3equ_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_273462.1_ARO_3003937_Neisseria_3equ_B/gb_NP_273462.1_ARO_3003937_Neisseria_meningititis_PBP2_conferring_resistance_to_beta-lactam__Neisseria_meningitidis_MC58.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_273462.1_ARO_3003937_Neisseria_3equ_B/3equ_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_NP_273462.1_ARO_3003937_Neisseria_3equ_B/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_273462.1_ARO_3003937_Neisseria_meningititis_PBP2_conferring_resistance_to_beta-lactam__Neisseria_meningitidis_MC58
# 2: 3equ_B_mol_protein_length_542__Penicillin-binding_protein_2
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 581
# Identity:     420/581 (72.3%)
# Similarity:   424/581 (73.0%)
# Gaps:         156/581 (26.9%)
# Score: 2085.0
# 
#
#=======================================

gb_NP_273462.      1 MLIKSEYKPRMLPKEEQVKKPMTSNGRISFVLMAIAVLFAGLIARGLYLQ     50
                                                                       
3equ_B_mol_pr      0 --------------------------------------------------      0

gb_NP_273462.     51 TVTYNFLKEQGDNRIVRTQTLPATRGTVSDRNGAVLALSAPTESLFAVPK    100
                                   |||||.|||||||||||||||||||||         
3equ_B_mol_pr      1 --------------IVRTQALPATRGTVSDRNGAVLALSAP---------     27

gb_NP_273462.    101 EMKEMPSAAQLERLSELVDVPVDVLRNKLEQKGKSFIWIKRQLDPKVAEE    150
                                                                       
3equ_B_mol_pr     27 --------------------------------------------------     27

gb_NP_273462.    151 VKALGLENFVFEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSL    200
                                  |||||||||||||||||||||||||||||||||||||
3equ_B_mol_pr     28 -------------ELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSL     64

gb_NP_273462.    201 HGEDGAEVVLRDRQGNIVDSLDSPRNKAPKNGKDIILSLDQRIQTLAYEE    250
                     :|||||||||||   ||||||||||||||:||||||||||||||||||||
3equ_B_mol_pr     65 YGEDGAEVVLRD---NIVDSLDSPRNKAPQNGKDIILSLDQRIQTLAYEE    111

gb_NP_273462.    251 LNKAVEYHQAKAGTVVVLDARTGEILALANTPAYDPNRPGRADSEQRRNR    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3equ_B_mol_pr    112 LNKAVEYHQAKAGTVVVLDARTGEILALANTPAYDPNRPGRADSEQRRNR    161

gb_NP_273462.    301 AVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNTQPYKIGPSPVRDTHVY    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3equ_B_mol_pr    162 AVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNTQPYKIGPSPVRDTHVY    211

gb_NP_273462.    351 PSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGVRMHSGFPGET    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3equ_B_mol_pr    212 PSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGVRMHSGFPGET    261

gb_NP_273462.    401 AGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHDGVLLPVSFE    450
                     ||||||||||||||||||||||||||||||||||||||||||||||:|||
3equ_B_mol_pr    262 AGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHDGVLLPLSFE    311

gb_NP_273462.    451 KQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGT    500
                     |||||||||||||| |||||||||||||||||||||||||||||||||||
3equ_B_mol_pr    312 KQAVAPQGKRIFKE-TAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGT    360

gb_NP_273462.    501 ARKFVNGRYADNKHIATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAG    550
                     |||        |||:|||||||||||||||||||||||||||||||||||
3equ_B_mol_pr    361 ARK--------NKHVATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAG    402

gb_NP_273462.    551 PPFKKIMGGSLNILGISPTKPLTAAAVKTPS    581
                     |||||||||||||||||||||||        
3equ_B_mol_pr    403 PPFKKIMGGSLNILGISPTKPLT--------    425


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