########################################
# Program: needle
# Rundate: Wed 30 May 2018 15:10:39
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_253654.1_ARO_3003685_Pseudomonas_4juo_C/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_253654.1_ARO_3003685_Pseudomonas_4juo_C/gb_NP_253654.1_ARO_3003685_Pseudomonas_aeruginosa_parE_conferring_resistance_to_fluoroquinolones__Pseudomonas_aeruginosa_PAO1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_253654.1_ARO_3003685_Pseudomonas_4juo_C/4juo_C.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_253654.1_ARO_3003685_Pseudomonas_4juo_C/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_253654.1_ARO_3003685_Pseudomonas_aeruginosa_parE_conferring_resistance_to_fluoroquinolones__Pseudomonas_aeruginosa_PAO1
# 2: 4juo_C_mol_protein_length_670__DNA_topoisomerase_4_subunit_B
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 637
# Identity:     234/637 (36.7%)
# Similarity:   322/637 (50.5%)
# Gaps:          99/637 (15.5%)
# Score: 909.0
# 
#
#=======================================

gb_NP_253654.      1 MATYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAL     47
                                     .||||||||   ||....:||..|::||:|||||
4juo_C_mol_pr      1 ----------------AVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEAL     34

gb_NP_253654.     48 AGHAKSVQVILHQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGG     97
                     :..   :.|.:::|.||.|.|         |.      ||:|.|.|||||
4juo_C_mol_pr     35 SDR---IDVTINKDGSLTVQD---------HT------VEVIFTILHAGG     66

gb_NP_253654.     98 KFSNKNYQFSGGLHGVGISVVNALSTRVEVRVKRDANEYRMTFADGFKD-    146
                     ||          |||||.|||||||:.:||.:.||...|:..|.:|.|. 
4juo_C_mol_pr     67 KF----------LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPV    106

gb_NP_253654.    147 SDLEVIGTVGKRNTGTSVHFWPDPKYFDSAKFSVSRLKHVLKAKAVLCPG    196
                     :.|:.|||..|..|||.|.|.||...|.:..|..:.:...|...|.|...
4juo_C_mol_pr    107 TTLKKIGTAPKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKN    156

gb_NP_253654.    197 LSVVFEDKNTGERVEWHFE-DGLRSYLTDAVAELPRLPDEPFCGNLEGSK    245
                     :::...||.|.|.:|:|:| ....|||.:....|  .|...|.|...|.:
4juo_C_mol_pr    157 VTLSLTDKRTDEAIEFHYEVQDFVSYLNEDKEIL--TPVLYFEGEDNGFQ    204

gb_NP_253654.    246 EAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE    295
                     ..|:   |...:|......|:||.:.|..||||..||:..:...|.::..
4juo_C_mol_pr    205 VEVA---LQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYAR    251

gb_NP_253654.    296 FRNLLPRGVKLAPEDVWERIAFVLSMKMQEP--QFSGQTKERLSSREAAA    343
                     ...||.   :....|..|.:|.|||:.:.|.  ||.||||::|.|..|..
4juo_C_mol_pr    252 KTGLLK---EKEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP    298

gb_NP_253654.    344 FVSGVVKDAFSLWLNEHAEIGLQLAELAISNAGRRLKAGKKVERKKITQG    393
                     .|.|:|.|..:.:|.|:.|:...|...||     :.:..::..||     
4juo_C_mol_pr    299 VVDGIVADKLTFFLMENGELASNLIRKAI-----KARDAREAARK-----    338

gb_NP_253654.    394 PALPGKLADCAGQEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKI    443
                         .:|.....:.|.:.||:|||||||||||||.||::||||:|||||:
4juo_C_mol_pr    339 ----ARLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV    384

gb_NP_253654.    444 LNTWEVDGGEVLASQEVHDIAVAIGVDPGAS-DLAQLRYGKICILADADS    492
                     :||.:....::|.::|::.:...||...||. .:....|.||.|:.|||:
4juo_C_mol_pr    385 INTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADT    434

gb_NP_253654.    493 DGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRIDLGKDIYYALDEAE    542
                     ||.||.|||...|.|:.||||||||||:| ||||:.       ||.    
4juo_C_mol_pr    435 DGAHIQTLLLTFFYRYMRPLVEAGHVYIA-PPLYKA-------YAW----    472

gb_NP_253654.    543 RDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTL    592
                     .||.||.|.        ::.|:|||||||..||.||||:|.||.|:::|:
4juo_C_mol_pr    473 TDGELEELR--------KLQRYKGLGEMNADQLWETTMNPETRTLIRVTI    514

gb_NP_253654.    593 EDATGTLEIMDMLLAKKRAGDRKSWLESKGNLAEVLV    629
                     ||.......:::|:..| ...|:.|:|......    
4juo_C_mol_pr    515 EDLARAERRVNVLMGDK-VEPRRKWIEDNVKFT----    546


#---------------------------------------
#---------------------------------------