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# Program: needle
# Rundate: Wed 30 May 2018 13:38:06
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_253464.1_ARO_3003582_basR_1kgs_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_253464.1_ARO_3003582_basR_1kgs_A/gb_NP_253464.1_ARO_3003582_basR__Pseudomonas_aeruginosa_PAO1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_253464.1_ARO_3003582_basR_1kgs_A/1kgs_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_253464.1_ARO_3003582_basR_1kgs_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_253464.1_ARO_3003582_basR__Pseudomonas_aeruginosa_PAO1
# 2: 1kgs_A_mol_protein_length_225__DNA_BINDING_RESPONSE_REGULATOR_D
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 227
# Identity:      90/227 (39.6%)
# Similarity:   135/227 (59.5%)
# Gaps:          14/227 ( 6.2%)
# Score: 385.5
# 
#
#=======================================

gb_NP_253464.      1 -MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLV     49
                      :|:|:.||:..|.|.|...|:.|..||:...||.......:.:.||:::
1kgs_A_mol_pr      1 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVI     50

gb_NP_253464.     50 LDIGLPRRSGLDILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYL     99
                     |||.||...|.:||:::|..|:.||||:|||...|..||.||:.||||||
1kgs_A_mol_pr     51 LDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYL    100

gb_NP_253464.    100 TKPFDLDELQARVRALTRRTTGRALPQLVHGELRLDPATHQVTLSGQAVE    149
                     .|||||.||.||||||.||.:.....:||.|:|.||.||.:.....:.::
1kgs_A_mol_pr    101 PKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEID    150

gb_NP_253464.    150 LAPREYALLRLLLENSGKVLSRNQLEQSLYGWSGDVESNAIEVHVHHLRR    199
                     |..:||.:|..|:.|..:|:::.:|::.|:     |.|:.:..|:.:||:
1kgs_A_mol_pr    151 LTKKEYQILEYLVMNKNRVVTKEELQEHLW-----VFSDVLRSHIKNLRK    195

gb_NP_253464.    200 KLG----NQLIRTVRGIGY-GIDQPAP    221
                     |:.    .::|.||||||| ..|:   
1kgs_A_mol_pr    196 KVDKGFKKKIIHTVRGIGYVARDE---    219


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