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# Program: needle
# Rundate: Wed 30 May 2018 17:04:24
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_NP_252410.1_ARO_3000818_nalC_3dew_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_NP_252410.1_ARO_3000818_nalC_3dew_A/gb_NP_252410.1_ARO_3000818_nalC__Pseudomonas_aeruginosa_PAO1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_NP_252410.1_ARO_3000818_nalC_3dew_A/3dew_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_NP_252410.1_ARO_3000818_nalC_3dew_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_252410.1_ARO_3000818_nalC__Pseudomonas_aeruginosa_PAO1
# 2: 3dew_A_mol_protein_length_206__Transcriptional_regulator,_TetR_family
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 251
# Identity:      51/251 (20.3%)
# Similarity:    78/251 (31.1%)
# Gaps:          97/251 (38.6%)
# Score: 130.0
# 
#
#=======================================

gb_NP_252410.      1 MNDASPRLTERGRQRRRAMLDAATQAFLEHGFEGTTLDMVIERAGGSRGT     50
                                  ..|..:::.||:.|.:.||.|.::..:.:.||.|...
3dew_A_mol_pr      1 -------------DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISM     37

gb_NP_252410.     51 LYSSFGGKEGLFAAVIAHM---IGEIFDDSADQPRPAATLSATL-----E     92
                     :...|||||||:|||:...   .|::.|.......|.|.::|.|     .
3dew_A_mol_pr     38 ISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDPLAVMTAYLRWTIQR     87

gb_NP_252410.     93 HFGR----RFLTS-----------LLDPRCQSLYRLVVAESPR-------    120
                     |...    ||.||           ::.|...|:.|| :|||..       
3dew_A_mol_pr     88 HRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRL-LAESIEAGMTRGL    136

gb_NP_252410.    121 ----FPAIGKSFYEQGPQQSYLLLS----ERLAAVAPHMDEETLYAVACQ    162
                         ..|:..:....| ..:|..||    |.|.:.:|..|||.:......
3dew_A_mol_pr    137 FRRDLHAVNSALALAG-MVNYFFLSTLATEGLTSHSPDQDEELIRQYVAI    185

gb_NP_252410.    163 FLEMLKADLFLKALSVADFQPTMALLETRLKLSVDIIACYLEHLSQSPAQ    212
                     |...:.|                                           
3dew_A_mol_pr    186 FTRGIMA-------------------------------------------    192

gb_NP_252410.    213 G    213
                      
3dew_A_mol_pr    192 -    192


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