########################################
# Program: needle
# Rundate: Wed 30 May 2018 12:59:37
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_NP_251858.1_ARO_3003684_Pseudomonas_4tma_C/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_NP_251858.1_ARO_3003684_Pseudomonas_4tma_C/gb_NP_251858.1_ARO_3003684_Pseudomonas_aeruginosa_gyrA_conferring_resistance_to_fluoroquinolones__Pseudomonas_aeruginosa_PAO1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_NP_251858.1_ARO_3003684_Pseudomonas_4tma_C/4tma_C.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_NP_251858.1_ARO_3003684_Pseudomonas_4tma_C/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_251858.1_ARO_3003684_Pseudomonas_aeruginosa_gyrA_conferring_resistance_to_fluoroquinolones__Pseudomonas_aeruginosa_PAO1
# 2: 4tma_C_mol_protein_length_525__DNA_gyrase_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 923
# Identity:     370/923 (40.1%)
# Similarity:   428/923 (46.4%)
# Gaps:         448/923 (48.5%)
# Score: 1885.5
# 
#
#=======================================

gb_NP_251858.      1 MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLY     50
                                        |||||||||||||||||.|||||||||||||
4tma_C_mol_pr      1 -------------------SYLDYAMSVIVGRALPDVRDGLKPVHRRVLY     31

gb_NP_251858.     51 AMSELGNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY    100
                     ||:.|||||||.||||||||||||||||||||:|||||||||||||||||
4tma_C_mol_pr     32 AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY     81

gb_NP_251858.    101 MLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLEKETVDWVPNYD    150
                     |||||||||||:|||:||||||||:|:||:||||:|||||||||:|.|||
4tma_C_mol_pr     82 MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD    131

gb_NP_251858.    151 GTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALMDN    200
                     |||:||.||||||||||||||||||||||||||||||.|||:||||.:|:
4tma_C_mol_pr    132 GTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDD    181

gb_NP_251858.    201 PDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRARAVVEE    250
                     .|::::.||::|||||||||.|||||.||.||||||||::||||||.| |
4tma_C_mol_pr    182 EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEV-E    230

gb_NP_251858.    251 MEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKD    300
                     ::...|||.||:.|:|||:||||||||||||||||::||||.||||||||
4tma_C_mol_pr    231 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD    280

gb_NP_251858.    301 GMRVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKD    350
                     |||:|||::|..||||||||||:|||||..||||:|||..|||:.:||||
4tma_C_mol_pr    281 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKD    330

gb_NP_251858.    351 MLEVFVRHRREVVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKS    400
                     ::..|||||||||||||::||||||:|.||||..||||:||||:||||:.
4tma_C_mol_pr    331 IIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRH    380

gb_NP_251858.    401 SPTPAEAKERLIATAWESSAVEAMVERAGADACRPEDLDPQYGLRDGKYY    450
                     :|||||||..|:|         ||:||||.:                   
4tma_C_mol_pr    381 APTPAEAKTALVA---------AMLERAGTE-------------------    402

gb_NP_251858.    451 LSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGELIRILTNPARLM    500
                        :||||||:|||.:||||||||||.||:|:|:.|.||:|||.:..|||
4tma_C_mol_pr    403 ---QQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLM    449

gb_NP_251858.    501 EVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVVTISHGGYA    550
                     ||||||||.|:.:|||.|||||.|:.                        
4tma_C_mol_pr    450 EVIREELELVREQFGDKRRTEITANS------------------------    475

gb_NP_251858.    551 KSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKV    600
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_251858.    601 YWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGAD    650
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_251858.    651 DDLDEAEGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVK    700
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_251858.    701 KTPLVQFSRPRSSGLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRF    750
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_251858.    751 AESVVRIMGRNARGVRGMRLGKGQQLISMLIPESGAQILTASERGFGKRT    800
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_251858.    801 PLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVR    850
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_251858.    851 TRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEA    900
                                                                       
4tma_C_mol_pr    475 --------------------------------------------------    475

gb_NP_251858.    901 AESLGESAESESEPAAEAEGNEE    923
                                            
4tma_C_mol_pr    475 -----------------------    475


#---------------------------------------
#---------------------------------------