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# Program: needle
# Rundate: Wed 30 May 2018 16:49:27
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_NP_249871.1_ARO_3003896_Pseudomonas_3cgz_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_NP_249871.1_ARO_3003896_Pseudomonas_3cgz_B/gb_NP_249871.1_ARO_3003896_Pseudomonas_mutant_PhoQ_conferring_resistance_to_colistin__Pseudomonas_aeruginosa_PAO1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_NP_249871.1_ARO_3003896_Pseudomonas_3cgz_B/3cgz_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_NP_249871.1_ARO_3003896_Pseudomonas_3cgz_B/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_249871.1_ARO_3003896_Pseudomonas_mutant_PhoQ_conferring_resistance_to_colistin__Pseudomonas_aeruginosa_PAO1
# 2: 3cgz_B_mol_protein_length_157__Virulence_sensor_histidine_kinase_phoQ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 449
# Identity:      58/449 (12.9%)
# Similarity:    84/449 (18.7%)
# Gaps:         314/449 (69.9%)
# Score: 273.5
# 
#
#=======================================

gb_NP_249871.      1 MIRSLRIRLMLGAAALAVLFMLALLPALQRAFGIALENTIEQRLAADVAT     50
                                                                       
3cgz_B_mol_pr      0 --------------------------------------------------      0

gb_NP_249871.     51 LVSAARVEKGRLVMPEHLPVEEFNLPEAKVLGYIYDQNGDLLWRSTSAAD    100
                                                                       
3cgz_B_mol_pr      0 --------------------------------------------------      0

gb_NP_249871.    101 ESINYTPRYDGRGNEFHTTRDAKGEEFFVFDVEIDLLRGKQAAYSIVTMQ    150
                                                                       
3cgz_B_mol_pr      0 --------------------------------------------------      0

gb_NP_249871.    151 SVSEFESLLKGFREQLYLWLGGALLVLLGLLWLGLTWGFRAMRGLSSELD    200
                                                                       
3cgz_B_mol_pr      0 --------------------------------------------------      0

gb_NP_249871.    201 QIESGERESLSEEHPRELLRLTHSLNRLLRSEHKQRERYRHSLGDLAHSL    250
                                                                       
3cgz_B_mol_pr      0 --------------------------------------------------      0

gb_NP_249871.    251 KTPLAVLQGVGDQLAEEPGNREQVRVLQGQIERMSQQIGYQLQRASLRKS    300
                                                                       
3cgz_B_mol_pr      0 --------------------------------------------------      0

gb_NP_249871.    301 GLVRHREQLAPLVETLCDALDKVYRDKRVSLQRDFSPSFSVPVERGALLE    350
                        |....:|||::.|..||:|||:.|.|::..|.||..|...|:...:|
3cgz_B_mol_pr      1 ---RELHPVAPLLDNLISALNKVYQRKGVNISMDISPEISFVGEQNDFVE     47

gb_NP_249871.    351 LLGNLLENAYRLCLGRVRVGARLGPGYSELWVEDDGPGVPAEQRARIIRR    400
                     ::||:|:||.:.||..|.:.||....:..::|||||||:|..:|:     
3cgz_B_mol_pr     48 VMGNVLDNACKYCLEFVEISARQTDDHLHIFVEDDGPGIPHSKRS-----     92

gb_NP_249871.    401 GERADTQHPGQGIGLAVALDIIESYDGELSLDDSELGGACFRIRFATV-    448
                          |..||||:|||||.:|.|.|.|::...||.||||...:.|... 
3cgz_B_mol_pr     93 -----TLRPGQGVGLAVAREITEQYAGQIIASDSLLGGARMEVVFGRQH    136


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