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# Program: needle
# Rundate: Wed 30 May 2018 14:01:58
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_249870.1_ARO_3003895_Pseudomonas_4b09_D/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_249870.1_ARO_3003895_Pseudomonas_4b09_D/gb_NP_249870.1_ARO_3003895_Pseudomonas_mutant_PhoP_conferring_resistance_to_colistin__Pseudomonas_aeruginosa_PAO1.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_249870.1_ARO_3003895_Pseudomonas_4b09_D/4b09_D.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_NP_249870.1_ARO_3003895_Pseudomonas_4b09_D/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_NP_249870.1_ARO_3003895_Pseudomonas_mutant_PhoP_conferring_resistance_to_colistin__Pseudomonas_aeruginosa_PAO1
# 2: 4b09_D_mol_protein_length_240__TRANSCRIPTIONAL_REGULATORY_PROTEIN_BAER
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 231
# Identity:      72/231 (31.2%)
# Similarity:   115/231 (49.8%)
# Gaps:          23/231 (10.0%)
# Score: 244.5
# 
#
#=======================================

gb_NP_249870.      1 --MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLA     48
                       .::|:||||..|...|...|....:....:...::.|..|.:...||.
4b09_D_mol_pr      1 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLI     50

gb_NP_249870.     49 VIDLGLPGMSGLDLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDY     98
                     ::||.|||..|| ::||:| :....||:::||:....|::.||..|||||
4b09_D_mol_pr     51 LLDLMLPGTDGL-MLREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDY     98

gb_NP_249870.     99 VVKPFQFEELEARLNALLRRSSGFVQSTIEAGPLVLDLNRKQALVEEQPV    148
                      :||:...|:.||:..:|              ||::|..|.||....:.:
4b09_D_mol_pr     99 -IKPYSPREVVARVKTIL--------------PLIIDEGRFQASWRGKML    133

gb_NP_249870.    149 ALTAYEYRILEYLMRHHQQVVAKERLMEQLYPDDEERDANVIEVLVGRLR    198
                     .||..|:|:|:.|.....:|.::|:|:..||.|........|:..:..||
4b09_D_mol_pr    134 DLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLR    183

gb_NP_249870.    199 RKLEACGGFKP-IDTVRGQGYLF-TERCR--    225
                     ||||:....:. |..|.|.||.: .:.||  
4b09_D_mol_pr    184 RKLESLDAEQSFIRAVYGVGYRWEADACRIV    214


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