########################################
# Program: needle
# Rundate: Wed 30 May 2018 16:41:38
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_EEK14408.1_ARO_3003931_Capnocytophaga_4z2e_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_EEK14408.1_ARO_3003931_Capnocytophaga_4z2e_A/gb_EEK14408.1_ARO_3003931_Capnocytophaga_gingivalis_gyrA_conferring_resistance_to_fluoroquinolones__Capnocytophaga_gingivalis_ATCC_33624.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_EEK14408.1_ARO_3003931_Capnocytophaga_4z2e_A/4z2e_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_EEK14408.1_ARO_3003931_Capnocytophaga_4z2e_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_EEK14408.1_ARO_3003931_Capnocytophaga_gingivalis_gyrA_conferring_resistance_to_fluoroquinolones__Capnocytophaga_gingivalis_ATCC_33624
# 2: 4z2e_A_mol_protein_length_499__DNA_gyrase_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 840
# Identity:     251/840 (29.9%)
# Similarity:   355/840 (42.3%)
# Gaps:         359/840 (42.7%)
# Score: 1311.0
# 
#
#=======================================

gb_EEK14408.1      1 MVEGEKLIPINIEDQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFG     50
                       :.:.|:.:|:..:||.::|||:|||||:||||||||||||||||:|:|
4z2e_A_mol_pr      1 --QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYG     48

gb_EEK14408.1     51 MHELGVRSNTAHKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQWWNMRYM    100
                     |:||||..:..|||||||.|:|:||||||||||:|:.||||||||:.|||
4z2e_A_mol_pr     49 MNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYM     98

gb_EEK14408.1    101 LVDGQGNFGSIDGDSPAAMRYTEARMRKMAEDMLIDIDKETVDHSLNFDD    150
                     ||||.|||||:||||.||.|||||||.|:|.:||.||:|.|||...|:|.
4z2e_A_mol_pr     99 LVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDA    148

gb_EEK14408.1    151 TLLEPTVLPTRIPNLLVNGSSGIAVGMATNMPPHNLAEVVDGIIAYLGNQ    200
                     ...||.|||.|.|||||||::|||||||||:|||||.|.:|.:...:.|.
4z2e_A_mol_pr    149 NEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNP    198

gb_EEK14408.1    201 DITIDELMEYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVIRAKAHFEEV    250
                     ::|..:|||.:..||||||.::.|..|:.:|::||:|.:|:|::...|..
4z2e_A_mol_pr    199 EVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRTEIETT    248

gb_EEK14408.1    251 -NGRDCIVVTEVPYQVNPETMREQTSNLVKEGKLEGLADIVDQTGKGGMR    299
                      .||:.|||||.||.||...:.|....||:|.::||:..:.|::.:.|:|
4z2e_A_mol_pr    249 KTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR    298

gb_EEK14408.1    300 IVYELKKDAIPNVVLNNLFKHTALQSSFSVNNIALVNGRPQQLNLKDLIY    349
                     .|.|:|:||..||:||||||.|.:|::|..|.:|:.||.|:.|:|:.::.
4z2e_A_mol_pr    299 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILD    348

gb_EEK14408.1    350 HFVEHRHDVVYRRTEYELKKAKERIHILEGFMKVMATEDTMGKAIEIIRF    399
                     .::||:.:||.|||.::.:||:.|.|||||.:..:   |.:.:.|.|||.
4z2e_A_mol_pr    349 AYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIAL---DHIDEVIRIIRA    395

gb_EEK14408.1    400 HDKPKE---DLMTEFELTEIQAEAILALQLRRINKLLILQTKEEYEQLLA    446
                     .:...|   :||::|:|:|.|::|||.::|||:..|...:.:.||:.|||
4z2e_A_mol_pr    396 SETDAEAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLA    445

gb_EEK14408.1    447 QIIDLEDILARKERRTEIIKEELLEIKSKYGDERRSVIEYAGGDISIEDI    496
                     .|.||.||||:.||.::|||:||.|:|.|:.|:||:.:..          
4z2e_A_mol_pr    446 LIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMV----------    485

gb_EEK14408.1    497 IPDDQVVITISNAGYIKRTSVNEYKTQARGGVGQKASATRDKDFIEHLFI    546
                                                                       
4z2e_A_mol_pr    485 --------------------------------------------------    485

gb_EEK14408.1    547 GTNHQYMLFFTEKGKCFWLRVYEIPEGGKNTKGRAIQNLINIEPDDLVKA    596
                                                                       
4z2e_A_mol_pr    485 --------------------------------------------------    485

gb_EEK14408.1    597 VICTHDLKEKDYTNSHYVIMATKKGIIKKTSLEQYSRPRQNGIVAITIKE    646
                                                                       
4z2e_A_mol_pr    485 --------------------------------------------------    485

gb_EEK14408.1    647 DDELLEARLTSGNSQIMLAVKSGKAIRFPEDKVRAVGRSGSGVRGISLDS    696
                                                                       
4z2e_A_mol_pr    485 --------------------------------------------------    485

gb_EEK14408.1    697 DKDEVIGMIAIENPLEETVLVVSENGYGKRTFIDEPETGEAVYRITNRGG    746
                                                                       
4z2e_A_mol_pr    485 --------------------------------------------------    485

gb_EEK14408.1    747 KGVKTISITEKTGNLVAIKSVLEEDDLMIINKSGMAIRLPVSGLRVMGRA    796
                                                                       
4z2e_A_mol_pr    485 --------------------------------------------------    485

gb_EEK14408.1    797 TQGVRLINIKGNDSIAAVAKVMKEDEDENTTEEIENPTEE    836
                                                             
4z2e_A_mol_pr    485 ----------------------------------------    485


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