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# Program: needle
# Rundate: Wed 30 May 2018 15:12:40
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_CDO13981.1_ARO_3003585_Klebsiella_4kny_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_CDO13981.1_ARO_3003585_Klebsiella_4kny_B/gb_CDO13981.1_ARO_3003585_Klebsiella_mutant_PhoP_conferring_antibiotic_resistance_to_colistin__Klebsiella_pneumoniae.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_CDO13981.1_ARO_3003585_Klebsiella_4kny_B/4kny_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_CDO13981.1_ARO_3003585_Klebsiella_4kny_B/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_CDO13981.1_ARO_3003585_Klebsiella_mutant_PhoP_conferring_antibiotic_resistance_to_colistin__Klebsiella_pneumoniae
# 2: 4kny_B_mol_protein_length_227__KDP_operon_transcriptional_regulatory_protein_KdpE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 229
# Identity:      81/229 (35.4%)
# Similarity:   127/229 (55.5%)
# Gaps:           9/229 ( 3.9%)
# Score: 347.0
# 
#
#=======================================

gb_CDO13981.1      1 --MRVLVVEDNALLRHHLKVQLQELGHQVDAAEDAREADYYLGEHLPDIA     48
                       ..||:|||...:|..|:..|:..|.:|..||..:..........||:.
4kny_B_mol_pr      1 AMANVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLI     50

gb_CDO13981.1     49 IVDLGLPDEDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDY     98
                     |:||||||.||:..||..|... ::||:||:||....||:..|.||||||
4kny_B_mol_pr     51 ILDLGLPDGDGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDY     99

gb_CDO13981.1     99 VTKPFHIEEVAARMQALLRRNSGLAS--QVISLPPFQVDLSRRELSVNDQ    146
                     ::|||.|.|:.||::..|||:|...:  .::......|||:.|.:...::
4kny_B_mol_pr    100 LSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEE    149

gb_CDO13981.1    147 PIKLTAFEYTIMETLIRNRGKVVSKDSLMLQLYPDAELRESHTIDVLMGR    196
                     .:.||..|:.::..|:.|.|||:::..|:.|::....:..||.:.:.||.
4kny_B_mol_pr    150 EVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGH    199

gb_CDO13981.1    197 LRKKIQAE--YPQDVITTVRGQGYLFELR    223
                     ||:|::.:  .|:..||.. |.||.|.| 
4kny_B_mol_pr    200 LRQKLEQDPARPRHFITET-GIGYRFML-    226


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