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# Program: needle
# Rundate: Wed 30 May 2018 17:06:02
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_CCP46748.1_ARO_3003470_Mycobacterium_1jsx_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_CCP46748.1_ARO_3003470_Mycobacterium_1jsx_A/gb_CCP46748.1_ARO_3003470_Mycobacterium_tuberculosis_gidB_mutation_conferring_resistance_to_streptomycin__Mycobacterium_tuberculosis_H37Rv.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_CCP46748.1_ARO_3003470_Mycobacterium_1jsx_A/1jsx_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_CCP46748.1_ARO_3003470_Mycobacterium_1jsx_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_CCP46748.1_ARO_3003470_Mycobacterium_tuberculosis_gidB_mutation_conferring_resistance_to_streptomycin__Mycobacterium_tuberculosis_H37Rv
# 2: 1jsx_A_mol_protein_length_207__Glucose-inhibited_division_protein_B
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 244
# Identity:      56/244 (23.0%)
# Similarity:    99/244 (40.6%)
# Gaps:          71/244 (29.1%)
# Score: 204.0
# 
#
#=======================================

gb_CCP46748.1      1 MSPIEPAASAIFGPRLGLARRYAEALAGPGV------ERGLVGPREVGRL     44
                                      :..:.:..|...|:      :..|:....:...
1jsx_A_mol_pr      1 -----------------MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHK     33

gb_CCP46748.1     45 WD----RHLLNCAVIGELLERGDRVVDIGSGAGLPGVPLAIARPDLQVVL     90
                     |:    ||:|:..|:...|: |:|.:|:|:|.||||:||:|.||:....|
1jsx_A_mol_pr     34 WNEMLVRHILDSIVVAPYLQ-GERFIDVGTGPGLPGIPLSIVRPEAHFTL     82

gb_CCP46748.1     91 LEPLLRRTEFLREMVTDLGVA-VEIVRGRAEESWVQDQLGGSDAAVSRAV    139
                     |:.|.:|..|||::..:|.:. :|.|:.|.||...:...   |..:|||.
1jsx_A_mol_pr     83 LDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPF---DGVISRAF    129

gb_CCP46748.1    140 AALDKLTKWSMPLIRPNGRMLAIKGERAHDEV----REHR-----RVMIA    180
                     |:|:.:..|...|....||..|:||:...||:    .|::     ::.:.
1jsx_A_mol_pr    130 ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPEEYQVESVVKLQVP    179

gb_CCP46748.1    181 SGAVDVRVVTCGANYLRPPATVVFARRGKQIARGSARMASGGTA    224
                     .|  :..:|...||.:                            
1jsx_A_mol_pr    180 DG--ERHLVVIKANKI----------------------------    193


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