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# Program: needle
# Rundate: Wed 30 May 2018 11:56:09
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAG39573_ARO_3003735_Staphylococcus_2xex_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAG39573_ARO_3003735_Staphylococcus_2xex_B/gb_CAG39573_ARO_3003735_Staphylococcus_mutant_fusA_gene_conferring_resistance_to_fusidic_acid__Staphylococcus_aureus_subsp._aureus_MRSA252.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAG39573_ARO_3003735_Staphylococcus_2xex_B/2xex_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAG39573_ARO_3003735_Staphylococcus_2xex_B/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_CAG39573_ARO_3003735_Staphylococcus_mutant_fusA_gene_conferring_resistance_to_fusidic_acid__Staphylococcus_aureus_subsp._aureus_MRSA252
# 2: 2xex_B_mol_protein_length_693__ELONGATION_FACTOR_G
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 693
# Identity:     675/693 (97.4%)
# Similarity:   675/693 (97.4%)
# Gaps:          18/693 ( 2.6%)
# Score: 3427.0
# 
#
#=======================================

gb_CAG39573_A      1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQM     50
                      ||||||||||||||||||||||||||||||||||||||||    |||||
2xex_B_mol_pr      1 -AREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIG----GASQM     45

gb_CAG39573_A     51 DWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLD    100
                     ||||||        ||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr     46 DWMEQE--------SAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLD     87

gb_CAG39573_A    101 GAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVST    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr     88 GAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVST    137

gb_CAG39573_A    151 LHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIP    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr    138 LHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIP    187

gb_CAG39573_A    201 EDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTN    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr    188 EDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTN    237

gb_CAG39573_A    251 VEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVI    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr    238 VEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVI    287

gb_CAG39573_A    301 AKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRE    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr    288 AKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRE    337

gb_CAG39573_A    351 RVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILES    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr    338 RVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILES    387

gb_CAG39573_A    401 MEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVII    450
                     |||||||||||||||||||||||||||||||||||||||||     ||||
2xex_B_mol_pr    388 MEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHT-----QVII    432

gb_CAG39573_A    451 GGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQS    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr    433 GGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQS    482

gb_CAG39573_A    501 GGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAME    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr    483 GGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAME    532

gb_CAG39573_A    551 NGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVI    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr    533 NGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVI    582

gb_CAG39573_A    601 LEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSE    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr    583 LEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSE    632

gb_CAG39573_A    651 MFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNKGE    693
                     |||||||||||||||||||||||||||||||||||||||||||
2xex_B_mol_pr    633 MFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNKGE    675


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